YRC Public Data Repository - Protein Structure Prediction

Protein:	CNX3_ARATH
Organism:	Arabidopsis thaliana
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNX3_ARATH.

Description	E-value	Query Range	Subject Range
Mocs1-PC - The gene Mocs1 is referred to in FlyBase by the symbol Dmel\Mocs1 (CG33048, FBgn0036122). It is a pr...	277.0	[0..61]	[269..347]
gi\|157767524 - gi\|157767524\|ref\|XP_001667242.1\| Hypothetical protein CBG16084 [Caenorhabditis briggsae AF16] gi\|39596156, gi\|... - gi\|39596156\|emb\|CAE69793.1\| Hypothetical protein CBG16084 [Caenorhabditis briggsae], gi\|187026708\|em...	275.0	[0..58]	[264..350]
gi\|116220225, gi... - gi\|75819546\|ref\|ZP_00749621.1\| COG0315: Molybdenum cofactor biosynthesis enzyme [Vibrio cholerae V51...	272.0	[0..113]	[268..1]
gi\|75816289 - gi\|75816289\|ref\|ZP_00746764.1\| COG0315: Molybdenum cofactor biosynthesis enzyme [Vibrio cholerae V52... gi\|75826331 - gi\|75826331\|ref\|ZP_00755766.1\| COG0315: Molybdenum cofactor biosynthesis enzyme [Vibrio cholerae O39... tr\|C6YBL4\|C6YBL4... - Cyclic pyranopterin monophosphate synthase accessory protein OS=Vibrio cholerae MO10 GN=moaC PE=3 SV... gi\|254848156, gi... - gi\|75829865\|ref\|ZP_00759155.1\| COG0315: Molybdenum cofactor biosynthesis enzyme [Vibrio cholerae MO1...	272.0	[0..113]	[268..1]
MOAC_VIBCH - Molybdenum cofactor biosynthesis protein C OS=Vibrio cholerae GN=moaC PE=3 SV=1 MOAC_VIBCH - Cyclic pyranopterin monophosphate synthase accessory protein OS=Vibrio cholerae serotype O1 (strain ... gi\|229357600, gi... - gi\|229505377\|ref\|ZP_04394887.1\| molybdenum cofactor biosynthesis protein C [Vibrio cholerae BX 33028... gi\|229518074, gi... - gi\|229518074\|ref\|ZP_04407518.1\| molybdenum cofactor biosynthesis protein C [Vibrio cholerae RC9], gi... gi\|121728163, gi... - gi\|121728163\|ref\|ZP_01681198.1\| molybdenum cofactor biosynthesis protein C [Vibrio cholerae V52], gi... gi\|121548388, gi... - gi\|121587385\|ref\|ZP_01677155.1\| molybdenum cofactor biosynthesis protein C [Vibrio cholerae 2740-80]... MOAC_VIBCM - Cyclic pyranopterin monophosphate synthase accessory protein OS=Vibrio cholerae serotype O1 (strain ... gi\|125617739 - gi\|125617739\|gb\|EAZ46294.1\| molybdenum cofactor biosynthesis protein C [Vibrio cholerae MO10] gi\|153800952, gi... - gi\|153800952\|ref\|ZP_01955538.1\| molybdenum cofactor biosynthesis protein C [Vibrio cholerae MZO-3], ... gi\|126520103, gi... - gi\|229510953\|ref\|ZP_04400432.1\| molybdenum cofactor biosynthesis protein C [Vibrio cholerae B33], gi... gi\|229371051, gi... - gi\|229608396\|ref\|YP_002879044.1\| molybdenum cofactor biosynthesis protein C [Vibrio cholerae MJ-1236... gi\|153819305, gi... - gi\|153819305\|ref\|ZP_01971972.1\| molybdenum cofactor biosynthesis protein C [Vibrio cholerae NCTC 845... gi\|197750920, gi... - gi\|254291752\|ref\|ZP_04962538.1\| molybdenum cofactor biosynthesis protein C [Vibrio cholerae AM-19226... MOAC_VIBC3 - Cyclic pyranopterin monophosphate synthase accessory protein OS=Vibrio cholerae serotype O1 (strain ...	271.0	[0..113]	[268..2]
MOAC_ACTPJ - Cyclic pyranopterin monophosphate synthase accessory protein OS=Actinobacillus pleuropneumoniae sero... MOAC_ACTP7 - Cyclic pyranopterin monophosphate synthase accessory protein OS=Actinobacillus pleuropneumoniae sero... gi\|32033742 - gi\|32033742\|ref\|ZP_00134037.1\| COG0315: Molybdenum cofactor biosynthesis enzyme [Actinobacillus pleu... MOAC_ACTP2 - Cyclic pyranopterin monophosphate synthase accessory protein OS=Actinobacillus pleuropneumoniae sero...	271.0	[0..113]	[267..1]
gi\|116216796, gi... - gi\|75823610\|ref\|ZP_00753100.1\| COG0315: Molybdenum cofactor biosynthesis enzyme [Vibrio cholerae RC3...	271.0	[0..113]	[268..1]
gi\|109485692, gi... - gi\|149069513\|gb\|EDM18954.1\| molybdenum cofactor synthesis 1 (predicted), isoform CRA_c [Rattus norve...	270.0	[0..75]	[269..434]
MOAC_VIBVY - Cyclic pyranopterin monophosphate synthase accessory protein OS=Vibrio vulnificus (strain YJ016) GN=...	269.0	[0..113]	[268..1]
gi\|89073363, gi\|... - gi\|89073363\|ref\|ZP_01159887.1\| molybdenum cofactor biosynthesis protein C [Photobacterium sp. SKA34]...	268.0	[0..113]	[268..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISTLRRAVF LRRFPAVVSP IKRAFSSRID DEFDPQIMNI NELNQEMQSI FGQEPSPDGP  60
   61 GTMDFSELKS SKIEPLRSKN IDFRQQIEYH KSTHSSKNDS QAIEQYAKVA SDMS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.447	N/A	N/A	c.53.1	Resolvase-like
View	Download	0.447	N/A	N/A	c.53.1	Resolvase-like
View	Download	0.446	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.404	N/A	N/A	a.1.1	Globin-like
View	Download	0.323	N/A	N/A	a.39.2	Insect pheromon/odorant-binding proteins
View	Download	0.318	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.311	N/A	N/A	a.7.14	Description not found.
View	Download	0.290	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.290	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.284	N/A	N/A	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.239	N/A	N/A	a.39.2	Insect pheromon/odorant-binding proteins

Predicted Domain #2

Region A:
Residues: [115-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLTHVGIAGE AQMVDVSSKD NSKRTALACC KVILGKRVFD LVLANQMGKG DVLGVAKIAG  60
   61 INGAKQTSSL IPLCHNIALT HVRVDLRLNP EDFSVDIEGE ASCTGKTGVE MEAMTAVSVA 120
  121 GLTVYDMCKA ASKDISITDV RLERKTGGKS GSWSRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	1ekrA
Description:	Molybdenum cofactor biosynthesis protein C, MoaC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits