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View Structure Prediction Details

Protein: CLH2_ARATH
Organism: Arabidopsis thaliana
Length: 318 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLH2_ARATH.

Description E-value Query
Range
Subject
Range
gi|27754534 - gi|27754534|gb|AAO22714.1| putative AtCLH2 protein [Arabidopsis thaliana]
195.0 [0..45] [318..20]

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Predicted Domain #1
Region A:
Residues: [1-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSRNAF EDGKYKSNLL TLDSSSRCCK ITPSSRASPS PPKQLLVATP VEEGDYPVVM  60
   61 LLHGYLLYNS FYSQLMLHVS SHGFILIAPQ LYSIAGPDTM DEIKSTAEIM DWLSVGLNHF 120
  121 LPAQVTPNLS KFALSGHSRG GKTAFAVALK KFGYSSNLKI STLIGIDPVD GTGKGKQTPP 180
  181 PVLAYLPNSF DLDKTPILVI GSGLGETARN PLFPPCAPPG VNHREFFREC QGPAWHFVAK 240
  241 DYGHLDMLDD DTKGIRGKSS YCLCKNGEER RPMRRFVGGL VVSFLKAYLE GDDRELVKIK 300
  301 DGCHEDVPVE IQEFEVIM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 1jfrA
Description: Lipase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle