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View Structure Prediction Details

Protein: CKX4_ARATH
Organism: Arabidopsis thaliana
Length: 524 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKX4_ARATH.

Description E-value Query
Range
Subject
Range
gi|89151095, gi|... - gi|89200934|ref|ZP_01179683.1| Glycolate oxidase subunit GlcD [Bacillus cereus subsp. cytotoxis NVH ...
354.0 [0..24] [520..1]

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Predicted Domain #1
Region A:
Residues: [1-524]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTLCLSLI TLITLFISLT PTLIKSDEGI DVFLPISLNL TVLTDPFSIS AASHDFGNIT  60
   61 DENPGAVLCP SSTTEVARLL RFANGGFSYN KGSTSPASTF KVAARGQGHS LRGQASAPGG 120
  121 VVVNMTCLAM AAKPAAVVIS ADGTYADVAA GTMWVDVLKA AVDRGVSPVT WTDYLYLSVG 180
  181 GTLSNAGIGG QTFRHGPQIS NVHELDVITG KGEMMTCSPK LNPELFYGVL GGLGQFGIIT 240
  241 RARIALDHAP TRVKWSRILY SDFSAFKRDQ ERLISMTNDL GVDFLEGQLM MSNGFVDTSF 300
  301 FPLSDQTRVA SLVNDHRIIY VLEVAKYYDR TTLPIIDQVI DTLSRTLGFA PGFMFVQDVP 360
  361 YFDFLNRVRN EEDKLRSLGL WEVPHPWLNI FVPGSRIQDF HDGVINGLLL NQTSTSGVTL 420
  421 FYPTNRNKWN NRMSTMTPDE DVFYVIGLLQ SAGGSQNWQE LENLNDKVIQ FCENSGIKIK 480
  481 EYLMHYTRKE DWVKHFGPKW DDFLRKKIMF DPKRLLSPGQ DIFN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.045757
Match: 1w1oA
Description: Native Cytokinin Dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.310870522438846 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle