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View Structure Prediction Details

Protein: CHIA_ARATH
Organism: Arabidopsis thaliana
Length: 302 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHIA_ARATH.

Description E-value Query
Range
Subject
Range
gi|2342459 - gi|2342459|dbj|BAA21873.1| acidic endochitinase [Arabidopsis thaliana]
253.0 [0..1] [302..1]

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Predicted Domain #1
Region A:
Residues: [1-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNMTLRKHV IYFLFFISCS LSKPSDASRG GIAIYWGQNG NEGNLSATCA TGRYAYVNVA  60
   61 FLVKFGNGQT PELNLAGHCN PAANTCTHFG SQVKDCQSRG IKVMLSLGGG IGNYSIGSRE 120
  121 DAKVIADYLW NNFLGGKSSS RPLGDAVLDG IDFNIELGSP QHWDDLARTL SKFSHRGRKI 180
  181 YLTGAPQCPF PDRLMGSALN TKRFDYVWIQ FYNNPPCSYS SGNTQNLFDS WNKWTTSIAA 240
  241 QKFFLGLPAA PEAAGSGYIP PDVLTSQILP TLKKSRKYGG VMLWSKFWDD KNGYSSSILA 300
  301 SV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.0
Match: 1hvqA
Description: CRYSTAL STRUCTURES OF HEVAMINE, A PLANT DEFENCE PROTEIN WITH CHITINASE AND LYSOZYME ACTIVITY, AND ITS COMPLEX WITH AN INHIBITOR
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
chitinase activity 3.75203266278127 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 3.1190602686215 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 2.98773241907716 bayes_pls_golite062009
catalytic activity 2.22613067995402 bayes_pls_golite062009
hydrolase activity 1.97740088175981 bayes_pls_golite062009
glucosidase activity 0.58717079348538 bayes_pls_golite062009
hexosaminidase activity 0.16438321606077 bayes_pls_golite062009
amylase activity 0.0914002140078796 bayes_pls_golite062009
alpha-amylase activity 0.0521244165288097 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle