YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CNG11_ARATH
Organism: Arabidopsis thaliana
Length: 621 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for CNG11_ARATH.

Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLQRRKFVR LDSTGVDGKL KSVRGRLKKV YGKMKTLENW RKTVLLACVV ALAIDPLFLF  60
   61 IPLIDSQRFC FTFDKTLVAV VCVIRTFIDT FYVIHIIYYL ITETIAPRSQ ASLRGEIVVH 120
  121 SKATLKTRLL FHFIVDIISV LPIPQVVVLT LIPLSASLVS ER

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [163-381]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILKWIILSQY VPRIIRMYPL YKEVTRAFGT VAESKRVGAA LNFFLYMLHS YVCGAFWYLS  60
   61 SIERKSTCWR AACARTSDCN LTVTDLLCKR AGSDNIRFLN TSCPLIDPAQ ITNSTDFDFG 120
  121 MYIDALKSGV LEVKPKDFPR KFVYCFWWGL RNISALGQNL ETSNSAGEIF FAIIICVSGL 180
  181 LLFAVLIGNV QKYLQSSTTR VDEMEEKKRD TEKWMSYRE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 2r9rB
Description: No description for 2r9rB was found.

Predicted Domain #3
Region A:
Residues: [382-621]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPEYLKERIR RFEDYKWRRT KGTEEEALLR SLPKDLRLET KRYLFLKLLK KVPLLQAMDD  60
   61 QLLDALCARL KTVHYTEKSY IVREGEPVED MLFIMRGNLI STTTYGGRTG FFNSVDLIAG 120
  121 DSCGDLLTWA LYSLSSQFPI SSRTVQALTE VEGFVISADD LKFVATQYRR LHSKQLQHMF 180
  181 RFYSLQWQTW AACFIQAAWK RHCRRKLSKA LREEEGKLHN TLQNDDSGGN KLNLGAAIYA 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 1wgpA
Description: Solution structure of the cNMP-binding domain from Arabidopsis thaliana cyclic nucleotide-regulated ion channel
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle