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View Structure Prediction Details

Protein: CDS1_ARATH
Organism: Arabidopsis thaliana
Length: 421 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDS1_ARATH.

Description E-value Query
Range
Subject
Range
gi|47125068 - gi|47125068|gb|AAH69879.1| Cds2 protein [Mus musculus]
373.0 [0..3] [419..21]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEENVTSSP STPVHRLRHR RRSNEVVTDG DKVNASPLLV NDRNKYKSFM VRTYSTLWMI  60
   61 GGFVLVVYMG HLYITAMVVV IQIFMAKELF NLLRKAPEDK CLPYIKQLNW HFFFTAMLFV 120
  121 YGRILSQRLA NTMTADQFFY RLVSGLIKYH MAICYLLYII GFMWFILTLK KKMYKYQFGQ 180
  181 YAWTHMILIV VFTQSSFTVA NIF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [204-421]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGIFWFLLPA SLIIINDIFA YIFGFFFGRT PLIKLSPKKT WEGFIGASVT TIISAFVLAN  60
   61 ILGRFPWLTC PRQDLSTGWL QCDADPLFKP EPFALPAWIP EWFPWKEMTI LPVQWHALCL 120
  121 GLFASIIAPF GGFFASGFKR AFKIKDFGDS IPGHGGITDR MDCQMVMAVF AYIYLQSFIV 180
  181 SQSVSVDKIL DQILTNLTFE EQQALFVKLG QMLKDKLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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