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View Structure Prediction Details

Protein: COBL7_ARATH
Organism: Arabidopsis thaliana
Length: 661 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COBL7_ARATH.

Description E-value Query
Range
Subject
Range
COBL8_ARATH - COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1
981.0 [0..6] [660..6]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAPNFIPR LLLLSLLIVS IPLTSSQSDA NTTNPSPSPP SDSDLCNGVF VSYTHTKGSK  60
   61 IPPNDTANQP YRFESVITVL NHGRDELKSW RVFVKFAHRE ILVSASNAVL SDGSSLPVSV 120
  121 ENGTVFAGYP SSDLKSAIQT AGDVTQMQAR VELVGTQFGV APPNVPLPKN ITLATDGWKC 180
  181 PKATQKGTNV LQVCCIPDPD YDNREIID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [209-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEFLPRKDGD LTIMYDVVRS YSSNYMAQVT MENHNPLGRL DNWKLSFDWM RDEFIYTMKG  60
   61 AYPSIVDSSD CVDGPQAKHY QDLDFSNVLS CARRPTVIDL PPTKYNDSTF GLIPFCCRNG 120
  121 TILPRSMDPS KSSSVFQMQV YKMPPDLNIS ALSPPQNWRI NGTLNPDYKC GPPVRVSPSQ 180
  181 FVDPSGLPSN RTAFASWQVV CNITQPKDAS PRCCVSFSAY FNDSIVPCKT CACGC

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 141.455932
Match: PF04833.6
Description: No description for PF04833.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [444-528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSNKAARACS ATAPSLLLPQ QALLVPFENR TELTVAWAYL KQRPVPNPMP CGDNCGVSIN  60
   61 WHLATDYRGG WTARVTVFNW GETDF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [529-661]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDWFTAVQMK NAAPGFEKAY SFNASTIGIN GKNNTIFMEG LPGLNYLVAE RDGENPLKNP  60
   61 RIPGKQQSVM SFTKKLTPGI NVPGGDGFPS KVFFNGEECS LPTILPMRSS QHRKHISVFL 120
  121 LALPVLALLI LRA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle