| Protein: | COBL6_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 454 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COBL6_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
717.0 | [0..27] | [451..28] |
|
|
714.0 | [0..8] | [449..13] |
|
|
707.0 | [0..30] | [444..25] |
|
|
699.0 | [0..1] | [447..1] |
|
|
696.0 | [0..27] | [451..27] |
|
|
695.0 | [0..8] | [454..3] |
|
Region A: Residues: [1-226] |
1 11 21 31 41 51
| | | | | |
1 MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH 60
61 VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT EQGNCSAFAS SGNLPHCCLE 120
121 RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF 180
181 DIGVPGYSCD NATSVSPTKF STDKGRRKTQ ALATWEAVCV YSQFRS
|
| Detection Method: |  |
| Confidence: | 61.236572 |
| Match: | PF04833.6 |
| Description: | No description for PF04833.6 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [227-318] |
1 11 21 31 41 51
| | | | | |
1 SPSPKCCVSL SAFYYQNIVP CPTCSCGCSS SHCVKDGELP PYLEQKHDPD EEVSPVVKCS 60
61 DHMCPIRIHW HVKVNYREYW RVKITATNFN TM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.555 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.555 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.519 | b.1.2 | Fibronectin type III |
| View | Download | 0.498 | b.1.2 | Fibronectin type III |
| View | Download | 0.455 | b.1.2 | Fibronectin type III |
| View | Download | 0.455 | b.1.2 | Fibronectin type III |
| View | Download | 0.394 | b.1.2 | Fibronectin type III |
| View | Download | 0.394 | b.1.2 | Fibronectin type III |
| View | Download | 0.350 | b.55.1 | PH domain-like |
| View | Download | 0.285 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.205 | d.45.1 | ClpS-like |
|
Region A: Residues: [319-454] |
1 11 21 31 41 51
| | | | | |
1 KNYTNWNLVV LHPNLKSVQQ VFSFNYKSLT PYQNSINDTG MFWGVQFYND VLLQEGKIGN 60
61 VQTELLLKKD MGNFTFREGW AFPRRILFNG DECVMPSPDD FPRLPKSAHS SSSSSAVISS 120
121 VSVVFCFLLH HLLLLV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.648 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.648 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.538 | N/A | N/A | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.513 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.513 | N/A | N/A | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.497 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.480 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.480 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.443 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
