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View Structure Prediction Details

Protein: CB4A_ARATH
Organism: Arabidopsis thaliana
Length: 290 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CB4A_ARATH.

Description E-value Query
Range
Subject
Range
gi|4689382 - gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
291.0 [0..12] [290..12]

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Predicted Domain #1
Region A:
Residues: [1-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATSAAAAA ASSIMGTRVA PGIHPGSGRF TAVFGFGKKK AAPKKSAKKT VTTDRPLWYP  60
   61 GAISPDWLDG SLVGDYGFDP FGLGKPAEYL QFDIDSLDQN LAKNLAGDVI GTRTEAADAK 120
  121 STPFQPYSEV FGIQRFRECE LIHGRWAMLA TLGALSVEWL TGVTWQDAGK VELVDGSSYL 180
  181 GQPLPFSIST LIWIEVLVIG YIEFQRNAEL DSEKRLYPGG KFFDPLGLAA DPEKTAQLQL 240
  241 AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIIDTFSSS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.154902
Match: 1vcrA
Description: An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle