| Protein: | CAP3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 611 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAP3_ARATH.
| Description | E-value | Query Range |
Subject Range |
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444.0 | [0..1] | [611..1] |
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364.0 | [0..1] | [529..1] |
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360.0 | [0..1] | [611..1] |
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356.0 | [0..12] | [593..5] |
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Region A: Residues: [1-335] |
1 11 21 31 41 51
| | | | | |
1 MGSSKLKRAI GAVKDQTSVG LAKVGGRSSS LTELEIAVVK ATRHDDYPAE DKYIREILCL 60
61 TSYSRNYVSA CVATLSRRLN KTKNWSVALK TLILIQRLLT DGDRAYEQEI FFATRRGTRL 120
121 LNMSDFRDAS QSDSWDYSAF VRTYALYLDE RLDYRMQGRR GKKKSGGGGG GDGDSGEEDD 180
181 HRGTSNDIRS KAIVVKSKPV AEMKTEKIFN RVQHLQQLLD RFLACRPTGN AKNNRVVIVA 240
241 MYPIVKESFQ LYYNITEIMG VLIERFMELD IHDSIKVYEI FCRVSKQFDE LDPFYGWCKN 300
301 MAVARSSEYP ELEKITQKKL DLMDEFIRDK SALAA
|
| Detection Method: |  |
| Confidence: | 86.522879 |
| Match: | 1hf8A |
| Description: | Clathrin assembly lymphoid myeloid leukaemia protein, Calm |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [336-429] |
1 11 21 31 41 51
| | | | | |
1 QTTKSSSKRS NKSEEEESKT EYIQENQEDL NSIKALPAPE QKEEEEEEEK METKKDVEEV 60
61 VSRQDQEGDL LDLTDEAGVT AGTVGDSLAL ALFD
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.309 | c.47.1 | Thioredoxin-like |
| View | Download | 0.303 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.298 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.298 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.283 | d.237.1 | Hypothetical protein YjiA, C-terminal domain |
| View | Download | 0.245 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.241 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.241 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.214 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
|
Region A: Residues: [430-611] |
1 11 21 31 41 51
| | | | | |
1 GVVGTESASG PGWEAFNDNS ADWETDLVRS ATRLSGQKSE LGGGFDTLLL DGMYQYGAVN 60
61 AAVKTSTAYG SSGSASSVAF GSAGSPAASM LALPAPPPTA NGNRNSPVMV DPFAASLEVA 120
121 PPAYVQMNDM EKKQRLLMEE QIMWDQYNRS GRQGHMNFGQ NQQQQYYQLP YSMGPYSYTP 180
181 RY
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| Detection Method: | |
| Confidence: | 6.045757 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
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