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View Structure Prediction Details

Protein: CAP18_ARATH
Organism: Arabidopsis thaliana
Length: 295 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAP18_ARATH.

Description E-value Query
Range
Subject
Range
CAP7_ARATH - Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1
319.0 [0..1] [282..1]

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Predicted Domain #1
Region A:
Residues: [1-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLATLNGI LKDEASQMKL NVVHLCSSVN AKTIDLALLK ATSHTSNNPP SDKYVTFLQS  60
   61 TIDTCYGPDT VDAILHRLRV TTDVCVAAKC LILLHKMVKS ESGYNGEDSL RNNINHRTLI 120
  121 YTQGGSNLKL NDLNVNSSRF TRELTPWVQW YKQYLDCYLS IAEVLGITPN IKEKNEDKRL 180
  181 ETQRVSSYPM DCILKQIDFL VELFEHISDR PKAPQSKLNK IVIEMTELMV QDYFSAIRLM 240
  241 RIRFEELNVR VAKPNELVPV LEKLENCKEG LSEFSWRSKY LIADFWYLVS KLKDM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.045757
Match: 1hf8A
Description: Clathrin assembly lymphoid myeloid leukaemia protein, Calm
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.229007340928547 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle