YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: BABL_ARATH
Organism: Arabidopsis thaliana
Length: 129 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BABL_ARATH.

Description E-value Query
Range
Subject
Range
gi|125545454 - gi|125545454|gb|EAY91593.1| hypothetical protein OsI_13228 [Oryza sativa Indica Group]
gi|108710699, gi... - gi|62733550|gb|AAX95667.1| Plastocyanin-like domain, putative [Oryza sativa (japonica cultivar-group...
167.0 [0..1] [128..1]

Back

Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGRGSASW SARAIVTLMA VSVLLLQADY VQAATYTVGD SGIWTFNAVG WPKGKHFRAG  60
   61 DVLVFNYNPR MHNVVKVDSG SYNNCKTPTG AKPYTSGKDR ITLSKGQNFF ICNFPNHCES 120
  121 DMKIAVTAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.522879
Match: 2cbpA
Description: CUCUMBER BASIC PROTEIN, A BLUE COPPER PROTEIN
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle