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View Structure Prediction Details

Protein: AVP1_ARATH
Organism: Arabidopsis thaliana
Length: 770 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AVP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|45479863 - gi|45479863|gb|AAS66771.1| PPase [Hevea brasiliensis]
1160.0 [0..5] [770..4]

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Predicted Domain #1
Region A:
Residues: [1-54]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAPALLPEL WTEILVPICA VIGIAFSLFQ WYVVSRVKLT SDLGASSSGG ANNG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [55-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNGYGDYLIE EEEGVNDQSV VAKCAEIQTA ISEGATSFLF TEYKYVGVFM IFFAAVIFVF  60
   61 LGSVEGFSTD NKP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [128-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CTYDTTRTCK PALATAAFST IAFVLGAVTS VLSGFLGMKI ATYANARTTL EARKGVGKAF  60
   61 IVAFRSGAVM GFLLAASGLL VLYITINVFK IY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [220-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGDDWEGLFE AITGYGLGGS SMALFGRVGG GIYTKAADVG ADLVGKIERN IPEDDPRNPA  60
   61 VIADNVGDNV GDIAGMGSDL FGSYAEASCA ALVVASISSF GINHDFTAMC YPLLISSMGI 120
  121 LVCLITTLFA TDFFEIKLVK EIEPALKNQL IISTVIMTVG IAIVSWVGLP TSFTIFNFGT 180
  181 QKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [403-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKNWQLFLCV CVGLWAGLII GFVTEYYTSN AYSPVQDVAD SCRTGAATNV IFGLALGYKS  60
   61 VIIPIFAIAI SIFVSFSFAA MYGVAVAALG MLSTIATGLA IDAYGPISDN AGGIAEMAGM 120
  121 SHR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [526-770]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRERTDALDA AGNTTAAIGK GFAIGSAALV SLALFGAFVS RAGIHTVDVL TPKVIIGLLV  60
   61 GAMLPYWFSA MTMKSVGSAA LKMVEEVRRQ FNTIPGLMEG TAKPDYATCV KISTDASIKE 120
  121 MIPPGCLVML TPLIVGFFFG VETLSGVLAG SLVSGVQIAI SASNTGGAWD NAKKYIEAGV 180
  181 SEHAKSLGPK GSEPHKAAVI GDTIGDPLKD TSGPSLNILI KLMAVESLVF APFFATHGGI 240
  241 LFKYF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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