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View Structure Prediction Details

Protein: ATK2_ARATH
Organism: Arabidopsis thaliana
Length: 745 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATK2_ARATH.

Description E-value Query
Range
Subject
Range
gi|73950343 - gi|73950343|ref|XP_544385.2| PREDICTED: similar to kinesin family member C3 [Canis familiaris]
408.0 [0..10] [728..447]

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Predicted Domain #1
Region A:
Residues: [1-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGEMTNNGR IRPSFPVKDL TSNEGSEYGG PVEFTREDVE TLLHERIKYK SKYNYKERCE  60
   61 NTMDYVKRLR LCIRWFQELE LDYAFEQEKL KNAMEMNEKH CADLEVNLKV KEEELNMVID 120
  121 ELRKNFASVQ VQLAKEQTEK LAANESLGKE REARIAVESL QAAITEELAK TQGELQTANQ 180
  181 RIQAVNDMYK LLQEYNSSLQ LYNSKLQGDL DEAHENIKRG EKERTGIVES IGNLKGQFKA 240
  241 LQDQLAASKV SQDDVMKQKD ELVNEIVSLK VEIQQVKDDR DRHITEIETL QAEATKQNDF 300
  301 KDTINELESK CSVQNKEIEE LQDQLVASER K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [332-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQVADLSTFE KMNEFEEQKE SIMELKGRLE EAELKLIEGE KLRKKLHNTI QELKGNIRVF  60
   61 CRVRPLLSGE NSSEEAKTIS YPT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.54
Match: 2ncdA
Description: Kinesin motor Ncd (non-claret disjunctional)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [415-745]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLEALGRGID LLQNGQSHCF TFDKVFVPSA SQEDVFVEIS QLVQSALDGY KVCIFAYGQT  60
   61 GSGKTYTMMG RPGNPDEKGL IPRCLEQIFQ TRQSLRSQGW KYELQVSMLE IYNETIRDLL 120
  121 STNKEAVRAD NGVSPQKYAI KHDASGNTHV VELTVVDVRS SKQVSFLLDH AARNRSVGKT 180
  181 AMNEQSSRSH FVFTLKISGF NESTEQQVQG VLNLIDLAGS ERLSKSGSTG DRLKETQAIN 240
  241 KSLSSLGDVI FALAKKEDHV PFRNSKLTYL LQPCLGGDSK TLMFVNITPE PSSTGESLCS 300
  301 LRFAARVNAC EIGTAHRHVN ARPLDYRLSL G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.154902
Match: 2repA
Description: No description for 2repA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle