| Protein: | ATHB4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 318 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATHB4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
127.0 | [0..158] | [242..1] |
|
Region A: Residues: [1-232] |
1 11 21 31 41 51
| | | | | |
1 MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW 60
61 THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD LEEEAAVVSS PNSAVSSLSG 120
121 NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK 180
181 EHSTLNPKQK LALAKQLNLR ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CD
|
| Detection Method: |  |
| Confidence: | 15.522879 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.971797124886045 | bayes_pls_golite062009 |
| nucleic acid binding | 0.74904610690468 | bayes_pls_golite062009 |
| DNA binding | 0.73457854282882 | bayes_pls_golite062009 |
|
Region A: Residues: [233-318] |
1 11 21 31 41 51
| | | | | |
1 NLTEENRRLQ KEVSELRALK LSPHLYMHMT PPTTLTMCPS CERVSSSAAT VTAAPSTTTT 60
61 PTVVGRPSPQ RLTPWTAISL QQKSGR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
