YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: APT1_ARATH
Organism: Arabidopsis thaliana
Length: 243 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|22295271, gi|... - gi|22299089|ref|NP_682336.1| ribose-phosphate pyrophosphokinase [Thermosynechococcus elongatus BP-1]...
208.0 [0..6] [242..126]

Back

Predicted Domain #1
Region A:
Residues: [1-60]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTIIISPLV SHRLCLARAV PCNRLLNNHH RAPPSIRLSN HRSTTSLRLF SSAAASRDSE  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [61-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEDVQDPR IAKIASSIRV IPDFPKPGIM FQDITTLLLD TEAFKDTIAL FVDRYKDKGI  60
   61 SVVAGVEARG FIFGPPIALA IGAKFVPMRK PKKLPGKVIS EEYSLEYGTD TIEMHVGAVE 120
  121 PGERAIIIDD LIATGGTLAA AIRLLERVGV KIVECACVIE LPELKGKEKL GETSLFVLVK 180
  181 SAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.154902
Match: 1oreA
Description: Human Adenine Phosphoribosyltransferase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle