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View Structure Prediction Details

Protein: AOX2_ARATH
Organism: Arabidopsis thaliana
Length: 353 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AOX2_ARATH.

Description E-value Query
Range
Subject
Range
gi|29465622 - gi|29465622|gb|AAK58482.1| alternative oxidase 1a [Lycopersicon esculentum]
501.0 [0..1] [353..2]
AOX1A_ARATH - Ubiquinol oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2
500.0 [0..1] [353..2]
AOX1_TOBAC - Ubiquinol oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1
482.0 [0..1] [353..2]
gi|40036979 - gi|40036979|gb|AAR37364.1| mitochondrial alternative oxidase [Nicotiana attenuata]
479.0 [0..1] [353..2]
gi|19912725 - gi|19912725|dbj|BAB88645.1| alternative oxidase [Triticum aestivum]
477.0 [0..1] [353..1]
gi|89474873 - gi|89474873|gb|AAP33163.2| mitochondrial alternative oxidase 2 [Cucumis sativus]
476.0 [0..1] [353..1]
gi|6634501 - gi|6634501|emb|CAB64356.1| alternative oxidase [Populus tremula x Populus tremuloides]
473.0 [0..8] [353..3]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLITKAAL RVLLVCGRGN CNMFVSSVSS TSVMKSPYEI TAPMRIHDWC GGFGDFKIGS  60
   61 KHVQGNFNLR WMGMSSASAM EKKDENL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVKKGQNGGG SVAVPSYWGI ETAKMKITRK DGSDWPWNCF MPWETYQANL SIDLKKHHVP  60
   61 KNIADKVAYR IVKLLRIPTD IFF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [171-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRRYGCRAMM LETVAAVPGM VGGMLLHLKS IRKFEHSGGW IKALLEEAEN ERMHLMTMME  60
   61 LVKPKWYERL LVMLVQGIFF NSFFVCYVIS PRLAHRVVGY LEEEAIHSYT EFLKDIDNGK 120
  121 IENVAAPAIA IDYWRLPKDA TLKDVVTVIR ADEAHHRDVN HFASDIRNQG KELREAAAPI 180
  181 GYH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.16
Match: 2oh3A
Description: No description for 2oh3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle