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View Structure Prediction Details

Protein: AMERL_ARATH
Organism: Arabidopsis thaliana
Length: 214 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMERL_ARATH.

Description E-value Query
Range
Subject
Range
gi|45767818 - gi|45767818|gb|AAH67667.1| Zgc:66100 protein [Danio rerio]
298.0 [0..1] [206..113]

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Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSANREMAV YCFDTLVSHY NNEETPPPAF EEANHPLFVT WKKIVNGGEP RLRGCIGTLE  60
   61 ARRLISGFKD YALTSALRDR RFPPIQAKEL PSLQCTVSVL TDYEDAEDYL DWEVGKHGII 120
  121 IEFTEPETNT KRSATYLPEV PAHEGWTKIE AIDSLVRKAG YNGVITEAVR RRINLTRYQS 180
  181 TLFSMHYSEY LSYVKATRGV VGPVINGINK HAFA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.69897
Match: 1vajA
Description: Crystal Structure of Uncharacterized Protein PH0010 From Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle