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View Structure Prediction Details

Protein: AKT1_ARATH
Organism: Arabidopsis thaliana
Length: 857 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AKT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|8980432 - gi|8980432|emb|CAA65254.1| potassium channel [Solanum lycopersicum]
572.0 [0..4] [856..11]

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Predicted Domain #1
Region A:
Residues: [1-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGGALLCGQ VQDEIEQLSR ESSHFSLSTG ILPSLGARSN RRVKLRRFVV SPYDHKYRIW  60
   61 EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNAFF AIDIIMTFFV GYLDKSTYLI 120
  121 VDDRKQIAFK YLRSWFLLDL VSTIPSEAAM RISSQSYGLF NMLRLWRLRR VGALFARLEK 180
  181 DRNFNYFWVR CAKLVCVTLF AVHCAACFYY LIAARNSNPA KTWIGANVAN FLEESLWMRY 240
  241 VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR 300
  301 NFRDTIQAAS NFAHRNHL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.0
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [319-493]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPRLQDQMLA HLCLKYRTDS EGLQQQETLD ALPKAIRSSI SHFLFYSLMD KVYLFRGVSN  60
   61 DLLFQLVSEM KAEYFPPKED VILQNEAPTD FYILVNGTAD LVDVDTGTES IVREVKAGDI 120
  121 IGEIGVLCYR PQLFTVRTKR LCQLLRMNRT TFLNIIQANV GDGTIIMNNL LQHLK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.33
Match: 2ptmA
Description: No description for 2ptmA was found.

Predicted Domain #3
Region A:
Residues: [494-857]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMNDPVMTNV LLEIENMLAR GKMDLPLNLC FAAIREDDLL LHQLLKRGLD PNESDNNGRT  60
   61 PLHIAASKGT LNCVLLLLEY HADPNCRDAE GSVPLWEAMV EGHEKVVKVL LEHGSTIDAG 120
  121 DVGHFACTAA EQGNLKLLKE IVLHGGDVTR PRATGTSALH TAVCEENIEM VKYLLEQGAD 180
  181 VNKQDMHGWT PRDLAEQQGH EDIKALFREK LHERRVHIET SSSVPILKTG IRFLGRFTSE 240
  241 PNIRPASREV SFRIRETRAR RKTNNFDNSL FGILANQSVP KNGLATVDEG RTGNPVRVTI 300
  301 SCAEKDDIAG KLVLLPGSFK ELLELGSNKF GIVATKVMNK DNNAEIDDVD VIRDGDHLIF 360
  361 ATDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.045757
Match: 1n11A
Description: Ankyrin-R
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle