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View Structure Prediction Details

Protein: HMA2_ARATH
Organism: Arabidopsis thaliana
Length: 951 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for HMA2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-658]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKKMTKSY FDVLGICCTS EVPLIENILN SMDGVKEFSV IVPSRTVIVV HDTLILSQFQ  60
   61 IVKALNQAQL EANVRVTGET NFKNKWPSPF AVVSGILLLL SFFKYLYSPF RWLAVAAVVA 120
  121 GIYPILAKAV ASLARFRIDI NILVVVTVGA TIGMQDYTEA AVVVFLFTIA EWLQSRASYK 180
  181 ASAVMQSLMS LAPQKAVIAE TGEEVEVDEL KTNTVIAVKA GETIPIDGVV VDGNCEVDEK 240
  241 TLTGEAFPVP KLKDSTVWAG TINLNGYITV NTTALAEDCV VAKMAKLVEE AQNSKTETQR 300
  301 FIDKCSKYYT PAIILISICF VAIPFALKVH NLKHWVHLAL VVLVSACPCG LILSTPVATF 360
  361 CALTKAATSG LLIKGADYLE TLAKIKIVAF DKTGTITRGE FIVMDFQSLS EDISLQSLLY 420
  421 WVSSTESKSS HPMAAAVVDY ARSVSVEPKP EAVEDYQNFP GEGIYGKIDG KEVYIGNKRI 480
  481 ASRAGCLSVP DIDVDTKGGK TIGYVYVGET LAGVFNLSDA CRSGVAQAMK ELKSLGIKIA 540
  541 MLTGDNHAAA MHAQEQLGNA MDIVRAELLP EDKSEIIKQL KREEGPTAMV GDGLNDAPAL 600
  601 ATADIGISMG VSGSALATET GNIILMSNDI RRIPQAIKLA KRAKRKVVEN VVISITMK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 115.0
Match: 3b8eA
Description: No description for 3b8eA was found.

Predicted Domain #2
Region A:
Residues: [659-743]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAILALAFAG HPLIWAAVLA DVGTCLLVIL NSMLLLSDKH KTGNKCYRES SSSSVLIAEK  60
   61 LEGDAAGDME AGLLPKISDK HCKPG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 112.0
Match: 1mhsA
Description: Proton ATPase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [744-951]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CCGTKTQEKA MKPAKASSDH SHSGCCETKQ KDNVTVVKKS CCAEPVDLGH GHDSGCCGDK  60
   61 SQQPHQHEVQ VQQSCHNKPS GLDSGCCGGK SQQPHQHELQ QSCHDKPSGL DIGTGPKHEG 120
  121 SSTLVNLEGD AKEELKVLVN GFCSSPADLA ITSLKVKSDS HCKSNCSSRE RCHHGSNCCR 180
  181 SYAKESCSHD HHHTRAHGVG TLKEIVIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.30103
Match: 1jv2B
Description: Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle