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View Structure Prediction Details

Protein: PIN3_ARATH
Organism: Arabidopsis thaliana
Length: 640 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIN3_ARATH.

Description E-value Query
Range
Subject
Range
gi|12331173 - gi|12331173|emb|CAC24691.1| efflux carrier of polar auxin transport [Brassica juncea]
631.0 [0..1] [640..1]

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Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS  60
   61 TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW SITIFSLSTL PNTLVMGIPL 120
  121 LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD 180
  181 VVSLDGHDFL ETDAEIG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [198-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDGKLHVTVR KSNASRRSFC GPNMTPRPSN LTGAEIYSLS TTPRGSNFNH SDFYNMMGFP  60
   61 GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE NCAMASSPRF GYYPGGGAGS YPAPNPEFSS 120
  121 TTTSTANKSV NKNPKDVNTN QQTTLPTGGK SNSHDAKELH MFVWSSNGSP VSDRAGLNVF 180
  181 GGAPDNDQGG RSDQGAKEIR MLVPDQSHNG ETKAVAHPAS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [418-640]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDFGGEQQFS FAGKEEEAER PKDAENGLNK LAPNSTAALQ SKTGLGGAEA SQRKNMPPAS  60
   61 VMTRLILIMV WRKLIRNPNT YSSLIGLIWA LVAFRWHVAM PKIIQQSISI LSDAGLGMAM 120
  121 FSLGLFMALQ PKLIACGNSV ATFAMAVRFL TGPAVMAVAA IAIGLRGDLL RVAIVQAALP 180
  181 QGIVPFVFAK EYNVHPAILS TGVIFGMLIA LPITLVYYIL LGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle