YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ACA1_ARATH
Organism: Arabidopsis thaliana
Length: 1020 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for ACA1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESYLNENFG DVKPKNSSDE ALQRWRKLCW IVKNPKRRFR FTANLSKRSE AEAIRRSNQE  60
   61 KFRVAVLVSQ AALQFINSLK LS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-1020]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEYTLPEEVR KAGFEICPDE LGSIVEGHDL KKLKIHGGTE GLTEKLSTSI ASGISTSEDL  60
   61 LSVRKEIYGI NQFTESPSRG FWLFVWEALQ DTTLMILAAC AFVSLIVGIL MEGWPIGAHD 120
  121 GLGIVASILL VVFVTATSDY RQSLQFKDLD AEKKKIVVQV TRDKLRQKIS IYDLLPGDVV 180
  181 HLGIGDQIPA DGLFISGFSV LINESSLTGE SEPVSVSVEH PFLLSGTKVQ DGSCKMLVTT 240
  241 VGMRTQWGKL MATLSEGGDD ETPLQVKLNG VATIIGKIGL FFAVITFAVL VQGLANQKRL 300
  301 DNSHWIWTAD ELMAMLEYFA VAVTIVVVAV PEGLPLAVTL SLAFAMKKMM NDKALVRNLA 360
  361 ACETMGSATT ICSDKTGTLT TNHMTVVKAC ICEQAKEVNG PDAAMKFASG IPESAVKLLL 420
  421 QSIFTNTGGE IVVGKGNKTE ILGTPTETAL LEFGLSLGGD FQEVRQASNV VKVEPFNSTK 480
  481 KRMGVVIELP ERHFRAHCKG ASEIVLDSCD KYINKDGEVV PLDEKSTSHL KNIIEEFASE 540
  541 ALRTLCLAYF EIGDEFSLEA PIPSGGYTCI GIVGIKDPVR PGVKESVAIC KSAGITVRMV 600
  601 TGDNLTTAKA IARECGILTD DGIAIEGPEF REKSDEELLK LIPKLQVMAR SSPMDKHTLV 660
  661 RLLRTMFQEV VAVTGDGTND APALHEADIG LAMGISGTEV AKESADVIIL DDNFSTIVTV 720
  721 AKWGRSVYIN IQKFVQFQLT VNVVALIVNF LSACLTGNAP LTAVQLLWVN MIMDTLGALA 780
  781 LATEPPQDDL MKRSPVGRKG NFISNVMWRN ILGQSLYQLV IIWCLQTKGK TMFGLDGPDS 840
  841 DLTLNTLIFN IFVFCQVFNE ISSREMEKID VFKGILKNYV FVAVLTCTVV FQVIIIELLG 900
  901 TFADTTPLNL GQWLVSIILG FLGMPVAAAL KMIPVGSH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 3b8eA
Description: No description for 3b8eA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle