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View Structure Prediction Details

Protein: ABP1_ARATH
Organism: Arabidopsis thaliana
Length: 198 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592915 - gi|21592915|gb|AAM64865.1| auxin-binding protein 1 precursor [Arabidopsis thaliana]
232.0 [0..1] [198..1]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLSVGSAS SSPIVVVFSV ALLLFYFSET SLGAPCPING LPIVRNISDL PQDNYGRPGL  60
   61 SHMTVAGSVL HGMKEVEIWL QTFAPGSETP IHRHSCEEVF VVLKGSGTLY LAETHGNFPG 120
  121 KPIEFPIFAN STIHIPINDA HQVKNTGHED LQVLVIISRP PIKIFIYEDW FMPHTAARLK 180
  181 FPYYWDEQCI QESQKDEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.09691
Match: 1lr5A
Description: Auxin binding protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle