YRC Public Data Repository - Protein Structure Prediction

Protein:	ALB32_ARATH
Organism:	Arabidopsis thaliana
Length:	525 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALB32_ARATH.

Description	E-value	Query Range	Subject Range
gi\|91798521, gi\|... - gi\|92115431\|ref\|YP_575359.1\| putative inner membrane protein translocase component YidC [Chromohalob...	253.0	[0..2]	[296..277]
OXAA_RALSO - Inner membrane protein oxaA OS=Ralstonia solanacearum GN=oxaA PE=3 SV=1 YIDC_RALSO - Membrane protein insertase YidC OS=Ralstonia solanacearum (strain GMI1000) GN=yidC PE=3 SV=1	248.0	[0..2]	[299..259]
gi\|88778642, gi\|... - gi\|88798542\|ref\|ZP_01114126.1\| putative inner membrane protein translocase component YidC [Reinekea ...	248.0	[0..1]	[294..262]
YIDC_CUPNH - Membrane protein insertase YidC OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier ...	247.0	[0..3]	[299..261]
OXAA_ERWCT, YIDC... - Membrane protein insertase YidC OS=Erwinia carotovora subsp. atroseptica GN=yidC PE=3 SV=1, Inner me... YIDC_PECAS - Membrane protein insertase YidC OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=...	247.0	[0..2]	[297..248]
YIDC_AROAE - Membrane protein insertase YidC OS=Aromatoleum aromaticum (strain EbN1) GN=yidC PE=3 SV=1	247.0	[0..3]	[299..257]
YIDC_BURXL - Membrane protein insertase YidC OS=Burkholderia xenovorans (strain LB400) GN=yidC PE=3 SV=1	245.0	[0..3]	[300..261]
OXAA_SALTI - Inner membrane protein oxaA OS=Salmonella typhi GN=oxaA PE=3 SV=1 gi\|16762484 - gi\|16762484\|ref\|NP_458101.1\| putative inner membrane protein translocase component YidC [Salmonella ... YIDC_SALTI - Membrane protein insertase YidC OS=Salmonella typhi GN=yidC PE=3 SV=1 gi\|29139608, gi\|... - gi\|29143972\|ref\|NP_807314.1\| putative inner membrane protein translocase component YidC [Salmonella ... gi\|213052693 - gi\|213052693\|ref\|ZP_03345571.1\| putative inner membrane protein translocase component YidC [Salmonel... gi\|213424948 - gi\|213424948\|ref\|ZP_03357698.1\| putative inner membrane protein translocase component YidC [Salmonel...	245.0	[0..2]	[297..250]
YIDC_SALPA, OXAA... - Membrane protein insertase YidC OS=Salmonella paratyphi A GN=yidC PE=3 SV=1, Inner membrane protein ... YIDC_SALPK - Membrane protein insertase YidC OS=Salmonella paratyphi A (strain AKU_12601) GN=yidC PE=3 SV=1 YIDC_SALPA - Membrane protein insertase YidC OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yidC PE=3 S... YIDC_SALA4 - Membrane protein insertase YidC OS=Salmonella agona (strain SL483) GN=yidC PE=3 SV=1 gi\|194468665, gi... - gi\|194468665\|ref\|ZP_03074649.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica ser... gi\|195632342, gi... - gi\|195632342\|gb\|EDX50826.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... gi\|205331641, gi... - gi\|205331641\|gb\|EDZ18405.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... YIDC_SALPB - Membrane protein insertase YidC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yidC PE=3... gi\|238913094 - gi\|238913094\|ref\|ZP_04656931.1\| putative inner membrane protein translocase component YidC [Salmonel... OXAA_SALPB - Inner membrane protein oxaA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=oxaA PE=3 SV=...	245.0	[0..2]	[297..250]
gi\|77634092 - gi\|77634092\|ref\|ZP_00796200.1\| COG0706: Preprotein translocase subunit YidC [Yersinia pestis Angola]	245.0	[0..2]	[297..225]

Back

Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVWRSCLRA SSSRHRLSSL FFSHHLKPSS FISHSPPLFS PSPSPSPTCF SPLHRLLSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [60-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPEFPIGSQE IIPTDDSSLP VLAVVDFLEG FHEFTGLPWW MIIASSTVAV RLALLPLLIL  60
   61 QLKKLKTISE LLPKLPMPIP ETPTLKGSID QFSHFLKESR AIGCPSFLWF FP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [172-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLSVQLPCFF LLMASIRKMS LDGHPGFDSG GVLWFQNLSD LPGGSFGPVF PILIATFHYI  60
   61 NIQISFDTST IRQT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [246-525]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGLTGLLMRY YKLYLEILSV PLFFVGYAIP QGSLVYWVTN SSVNIFQQLS LKHPTVGAKL  60
   61 GLLSQGATPG MGHSMEISES VIKYVDSDSK EQTLSLQTLT PEELLSLSVQ VLSKGDKETS 120
  121 IQLLRLALEK DPGYVRGLVL MGQALLQKTQ LSEATEYLEL AISKLLDEDP SDAEDVELLM 180
  181 LASQWAGAAY VQQGKLKSGI IHLERVAKLR EPGDPKSKEH YFEALLLLSS ALYKEGQSDE 240
  241 AAKILRVVVD HNPAYKPLLE QCEDENELVS DLVSRRKDHF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits