YRC Public Data Repository - Protein Structure Prediction

Protein:	Y4331_ARATH
Organism:	Arabidopsis thaliana
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y4331_ARATH.

Description	E-value	Query Range	Subject Range
gi\|39973917, gi\|... - gi\|39973917\|ref\|XP_368349.1\| hypothetical protein MG00895.4 [Magnaporthe grisea 70-15], gb\|EAA49237....	135.0	[0..12]	[89..2]
gi\|85094525 - gi\|85094525\|ref\|XP_959899.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28921356, gi\|... - gi\|32421175\|ref\|XP_331031.1\| hypothetical protein [Neurospora crassa], gi\|28921356\|gb\|EAA30663.1\| hy...	132.0	[0..12]	[92..2]
gi\|44980965, gi\|... - gi\|45185307\|ref\|NP_983024.1\| ABR078Cp [Ashbya gossypii ATCC 10895], gi\|44980965\|gb\|AAS50848.1\| ABR07... gi\|44980965 - gi\|44980965\|gb\|AAS50848.1\| ABR078Cp [Ashbya gossypii ATCC 10895]	130.0	[0..12]	[88..6]
orf19.12146, orf... - orf19.4676 CGDID:CAL0003791 Assembly 19, Contig19-10212 (219401, 219943) CDS, translated using codon... gi\|68466526, gi\|... - gi\|68466526\|ref\|XP_722745.1\| hypothetical protein CaO19.4676 [Candida albicans SC5314], gi\|68466233\|...	127.0	[0..12]	[90..97]
MDM35_YEAST - Mitochondrial distribution and morphology protein 35 OS=Saccharomyces cerevisiae (strain ATCC 204508... gi\|151941493 - gi\|151941493\|gb\|EDN59856.1\| mitochondrial distribution and morphology [Saccharomyces cerevisiae YJM7... MDM35 - Mitochondrial intermembrane space protein; mutation affects mitochondrial distribution and morpholog... gi\|190409775 - gi\|190409775\|gb\|EDV13040.1\| mitochondrial distribution and morphology protein 35 [Saccharomyces cere...	124.0	[0..12]	[89..6]
gi\|49529225 - gi\|49529225\|emb\|CAG62891.1\| unnamed protein product [Candida glabrata] gi\|50295000, gi\|... - gi\|50295000\|ref\|XP_449911.1\| hypothetical protein CAGL0M13057g [Candida glabrata CBS138], gi\|4952922...	119.0	[0..12]	[87..6]
gi\|49641895, gi\|... - gi\|50305605\|ref\|XP_452763.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641895\|emb\|CAH0161... gi\|49641895 - gi\|49641895\|emb\|CAH01613.1\| KLLA0C12639p [Kluyveromyces lactis]	113.0	[0..12]	[86..6]
gi\|49654939 - gi\|49654939\|emb\|CAG87446.1\| DEHA2D18062p [Debaryomyces hansenii] gi\|50421443, gi\|... - gi\|50421443\|ref\|XP_459272.1\| hypothetical protein DEHA0D19591g [Debaryomyces hansenii CBS767], gi\|49...	111.0	[0..12]	[91..6]
gi\|40804633 - gi\|40804633\|emb\|CAF05893.1\| conserved hypothetical protein [Neurospora crassa]	106.0	[0..12]	[91..2]
gi\|61864019 - gi\|61864019\|ref\|XP_603511.1\| PREDICTED: similar to p53-inducible cell-survival factor [Bos taurus]	101.0	[0..8]	[68..11]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLKKKDST SARSSTSPCA DLRNAYHNCF NKWYSEKFVK GQWDKEECVA EWKKYRDCLS  60
   61 ENLDGKLLTR ILEVDGELNP TKQATDSKES SS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.040959
Match:	PF05254.3
Description:	No description for PF05254.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.761	N/A	N/A	a.24.4	Hemerythrin
View	Download	0.739	N/A	N/A	a.24.4	Hemerythrin
View	Download	0.727	N/A	N/A	a.2.2	Ribosomal protein L29 (L29p)
View	Download	0.693	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.662	N/A	N/A	a.29.10	Description not found.
View	Download	0.585	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.562	N/A	N/A	a.151.1	Glutamyl tRNA-reductase dimerization domain
View	Download	0.560	N/A	N/A	a.12.1	Kix domain of CBP (creb binding protein)
View	Download	0.477	N/A	N/A	d.58.16	Poly(A) polymerase, C-terminal domain
View	Download	0.445	N/A	N/A	d.68.8	Description not found.
View	Download	0.414	N/A	N/A	d.58.16	Poly(A) polymerase, C-terminal domain
View	Download	0.407	N/A	N/A	d.58.48	MTH1187-like
View	Download	0.372	N/A	N/A	d.150.1	4'-phosphopantetheinyl transferase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits