YRC Public Data Repository - Protein Structure Prediction

Protein:	YOAM_BACSU
Organism:	Bacillus subtilis
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOAM_BACSU.

Description	E-value	Query Range	Subject Range
gi\|221314277 - gi\|221314277\|ref\|ZP_03596082.1\| hypothetical protein BsubsN3_11232 [Bacillus subtilis subsp. subtili... gi\|221319199 - gi\|221319199\|ref\|ZP_03600493.1\| hypothetical protein BsubsJ_11158 [Bacillus subtilis subsp. subtilis... YOQW_BACSU - UPF0361 protein yoqW OS=Bacillus subtilis GN=yoqW PE=3 SV=1 YOQW_BPSPB - Putative SOS response-associated peptidase yoqW OS=Bacillus phage SPbeta GN=yoqW PE=3 SV=1 YOQW_BACSU - Putative SOS response-associated peptidase YoqW OS=Bacillus subtilis (strain 168) GN=yoqW PE=3 SV=1 gi\|221323475 - gi\|221323475\|ref\|ZP_03604769.1\| hypothetical protein BsubsS_11287 [Bacillus subtilis subsp. subtilis...	308.0	[0..1]	[222..1]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGRFTLYSA FDDIIDQFDI DQFFPKGEYQ PSYNVAPSQN ILAIINDGSN NRLGKLRWGL  60
   61 IPPWAKDEKI GYKMINARAE TITEKPAFRR PLVSKRCIIP ADSFYEWKRL DSKTKIPMRI 120
  121 KLKSSALFAF AGLYEKWSTH QGYPLYTCTI ITTEPNEFMK DIHDRMPVIL AHDHEKEWLN 180
  181 PKNTSPDYLQ SLLLPYDADD MEAYQVSSLV NSPKNNSAEL LDAENHM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	2icuA
Description:	No description for 2icuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits