YRC Public Data Repository - Protein Structure Prediction

Protein:	RL16_BACSU
Organism:	Bacillus subtilis
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL16_BACSU.

Description	E-value	Query Range	Subject Range
RL16_THETN - 50S ribosomal protein L16 OS=Thermoanaerobacter tengcongensis GN=rplP PE=3 SV=1 RL16_CALS4 - 50S ribosomal protein L16 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / ...	196.0	[0..1]	[144..1]
RL16_THEPX - 50S ribosomal protein L16 OS=Thermoanaerobacter sp. (strain X514) GN=rplP PE=3 SV=1 gi\|242257808, gi... - gi\|242257808\|ref\|ZP_04802658.1\| ribosomal protein L16 [Thermoanaerobacter sp. X513], gi\|242230652\|gb...	193.0	[0..1]	[144..1]
RL16_THEP3 - 50S ribosomal protein L16 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplP P... gi\|241883317, gi... - gi\|241904334\|ref\|ZP_04789036.1\| ribosomal protein L16 [Thermoanaerobacter brockii subsp. finnii Ako-...	191.0	[0..1]	[143..1]
RL16_OCEIH - 50S ribosomal protein L16 OS=Oceanobacillus iheyensis GN=rplP PE=3 SV=1 RL16_OCEIH - 50S ribosomal protein L16 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HT...	189.0	[0..1]	[143..1]
gi\|89084963, gi\|... - gi\|89100342\|ref\|ZP_01173207.1\| 50S ribosomal protein L16 [Bacillus sp. NRRL B-14911], gi\|89084963\|gb...	188.0	[0..1]	[144..1]
RL16_CLOTH - 50S ribosomal protein L16 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / ... gi\|196253851, gi... - gi\|196253851\|ref\|ZP_03152456.1\| ribosomal protein L16 [Clostridium thermocellum DSM 4150], gi\|196196...	187.0	[0..1]	[144..1]
RL16_MOOTA - 50S ribosomal protein L16 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplP PE=3 SV=1	187.0	[0..1]	[143..1]
RL16_SYNJA - 50S ribosomal protein L16 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplP PE=3 SV=1 gi\|86605859 - gi\|86605859\|ref\|YP_474622.1\| ribosomal protein L16 [Cyanobacteria bacterium Yellowstone A-Prime]	187.0	[0..1]	[139..1]
RL16_PROM4 - 50S ribosomal protein L16 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplP PE=3 SV=1	186.0	[0..1]	[132..1]
RL16_DESHY - 50S ribosomal protein L16 OS=Desulfitobacterium hafniense (strain Y51) GN=rplP PE=3 SV=1	186.0	[0..1]	[144..1]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPKRVKYR REHRGKMRGR AKGGTEVHFG EFGIQALEAS WITNRQIEAA RIAMTRYMKR  60
   61 GGKVWIKIFP SKPYTAKPLE VRMGSGKGAP EGWVAVVKPG KVLFEISGVS EEVAREALRL 120
  121 ASHKLPIKTK FVKREEIGGE SNES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.221849
Match:	1njmK
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits