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View Structure Prediction Details

Protein: RESE_BACSU
Organism: Bacillus subtilis
Length: 589 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RESE_BACSU.

Description E-value Query
Range
Subject
Range
gi|52004036, gi|... - gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580], gi|52348698|gb|AAU41332.1| R...
389.0 [0..1] [589..1]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFWKSVVGK LWFTILSLVL IVLFILTVLL LEFIENYHVE EAENDLTQLA NKVAVILENH  60
   61 EDQALARSIT WELADNLTSI AIIQDEKNHW YSPNDKNRLS SITVEQIQHD KDLNKALKDH 120
  121 KKVSKRTGLS DTDTDNERLI VGVPYEKD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [149-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKKGMVFLSQ SLLAVKDTTK HTTRYIFLAA GIAIVLTTFF AFFLSSRVTY PLRKMREGAQ  60
   61 DLAKGKFDTK IPILTQDEIG ELATAFNQMG RQLNFHINAL NQEKEQLSNI LSSMADGVIT 120
  121 INIDGTILVT NPPAERFLQA WYYEQNMNIK EGDNLPPEAK ELFQNAVST

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.71
Match: 2f95B
Description: M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [318-589]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKEQMIEMTL QGRSWVLLMS PLYAESHVRG AVAVLRDMTE ERRLDKLRED FIANVSHELR  60
   61 TPISMLQGYS EAIVDDIASS EEDRKEIAQI IYDESLRMGR LVNDLLDLAR MESGHTGLHY 120
  121 EKINVNEFLE KIIRKFSGVA KEKNIALDHD ISLTEEEFMF DEDKMEQVFT NLIDNALRHT 180
  181 SAGGSVSISV HSVKDGLKID IKDSGSGIPE EDLPFIFERF YKADKARTRG RAGTGLGLAI 240
  241 VKNIVEAHNG SITVHSRIDK GTTFSFYIPT KR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.39794
Match: 2c2aA
Description: Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle