YRC Public Data Repository - Protein Structure Prediction

Protein:	NUSB_BACSU
Organism:	Bacillus subtilis
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUSB_BACSU.

Description	E-value	Query Range	Subject Range
NUSB_BACLD - N utilization substance protein B homolog OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JC...	150.0	[0..1]	[129..1]
gi\|49080752 - gi\|49080752\|gb\|AAT50054.1\| PA4052 [synthetic construct]	149.0	[0..3]	[131..21]
gi\|94417012, gi\|... - gi\|94417012\|ref\|ZP_01296834.1\| hypothetical protein PaerP_01001208 [Pseudomonas aeruginosa PA7], gi\|...	149.0	[0..3]	[131..21]
NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C /... gi\|46164642, gi\|... - gi\|46164642\|ref\|ZP_00205138.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa UCB... gi\|84325185, gi\|... - gi\|84325185\|ref\|ZP_00973225.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa 219... gi\|107103566 - gi\|107103566\|ref\|ZP_01367484.1\| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2] gi\|218889667, gi... - gi\|218889667\|ref\|YP_002438531.1\| transcription antitermination protein NusB [Pseudomonas aeruginosa ... NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa GN=nusB PE=3 SV=1	148.0	[0..3]	[131..21]
gi\|126168872, gi... - gi\|84319131\|ref\|ZP_00967534.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa C37...	147.0	[0..3]	[131..21]
gi\|89086098, gi\|... - gi\|89099252\|ref\|ZP_01172130.1\| transcription antitermination protein NusB [Bacillus sp. NRRL B-14911...	145.0	[0..1]	[130..1]
NUSB_SHELP - N utilization substance protein B homolog OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=nus...	142.0	[0..3]	[128..6]
gi\|88925497, gi\|... - gi\|88944826\|ref\|ZP_01148049.1\| Fmu, rRNA SAM-dependent methyltransferase:NusB antitermination factor...	142.0	[0..1]	[128..1]
NUSB_CLOTH - N utilization substance protein B homolog OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 ...	142.0	[0..1]	[126..1]
gi\|67085734, gi\|... - gi\|67157057\|ref\|ZP_00418419.1\| Antitermination protein NusB [Azotobacter vinelandii AvOP], gi\|670857... gi\|67157057, gi\|... - gi\|67157057\|ref\|ZP_00418419.1\| Antitermination protein NusB [Azotobacter vinelandii AvOP], ref\|ZP_00...	141.0	[0..3]	[131..21]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRTAREKA LQALFQIDVS DIAVNEAIEH ALDEEKTDPF FEQLVHGVLE HQDQLDEMIS  60
   61 KHLVNWKLDR IANVDRAILR LAAYEMAYAE DIPVNVSMNE AIELAKRFGD DKATKFVNGV 120
  121 LSNIKSDIGQ S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1tztA
Description:	T. maritima NusB, P21
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits