YRC Public Data Repository - Protein Structure Prediction

Protein:	NUCB_BACSU
Organism:	Bacillus subtilis
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUCB_BACSU.

Description	E-value	Query Range	Subject Range
gi\|52785785, gi\|... - gi\|52785785\|ref\|YP_091614.1\| NucB [Bacillus licheniformis ATCC 14580], gi\|52348287\|gb\|AAU40921.1\| Nu...	240.0	[0..1]	[136..2]
gi\|152025170, gi... - gi\|89202284\|ref\|ZP_01181011.1\| comI; possible competence-specific nuclease [Bacillus cereus subsp. c...	236.0	[0..3]	[136..2]
NUCA_BACSU - DNA-entry nuclease OS=Bacillus subtilis GN=nucA PE=4 SV=2 NUCA_BACSU - DNA-entry nuclease OS=Bacillus subtilis (strain 168) GN=nucA PE=4 SV=2	228.0	[0..22]	[136..33]
gi\|74491610, gi\|... - gi\|75760906\|ref\|ZP_00740917.1\| DNA-entry nuclease [Bacillus thuringiensis serovar israelensis ATCC 3... gi\|228805409, gi... - gi\|228954281\|ref\|ZP_04116308.1\| DNA-entry nuclease [Bacillus thuringiensis serovar kurstaki str. T03... gi\|228818498, gi... - gi\|228941168\|ref\|ZP_04103722.1\| DNA-entry nuclease [Bacillus thuringiensis serovar berliner ATCC 107... gi\|228671861, gi... - gi\|229111479\|ref\|ZP_04241030.1\| DNA-entry nuclease [Bacillus cereus Rock1-15], gi\|228671861\|gb\|EEL27... gi\|228980692, gi... - gi\|228980692\|ref\|ZP_04140998.1\| DNA-entry nuclease [Bacillus thuringiensis Bt407], gi\|228779031\|gb\|E...	224.0	[0..13]	[136..23]
gi\|30022093, gi\|... - gi\|30022093\|ref\|NP_833724.1\| DNA-entry nuclease [Bacillus cereus ATCC 14579], gi\|29897650\|gb\|AAP1092...	223.0	[0..13]	[136..19]
gi\|217961493, gi... - gi\|217961493\|ref\|YP_002340063.1\| competence-specific nuclease [Bacillus cereus AH187], gi\|217067196\|... gi\|228642710, gi... - gi\|229140737\|ref\|ZP_04269284.1\| DNA-entry nuclease [Bacillus cereus BDRD-ST26], gi\|228642710\|gb\|EEK9... gi\|206977390, gi... - gi\|206977390\|ref\|ZP_03238286.1\| competence-specific nuclease [Bacillus cereus H3081.97], gi\|20674438... gi\|42739030, gi\|... - gi\|42783102\|ref\|NP_980349.1\| competence-specific nuclease [Bacillus cereus ATCC 10987], gi\|42739030\|... gi\|228585286, gi... - gi\|229198126\|ref\|ZP_04324835.1\| DNA-entry nuclease [Bacillus cereus m1293], gi\|228585286\|gb\|EEK43395...	222.0	[0..12]	[136..18]
gi\|49180839, gi\|... - gi\|49186912\|ref\|YP_030164.1\| competence-specific nuclease [Bacillus anthracis str. Sterne], gi\|49180... gi\|51974956, gi\|... - gi\|52141487\|ref\|YP_085343.1\| competence-specific nuclease [Bacillus cereus E33L], gi\|51974956\|gb\|AAU... gi\|30264078, gi\|... - gi\|30264078\|ref\|NP_846455.1\| competence-specific nuclease [Bacillus anthracis str. Ames], gi\|3025872... gi\|47529513, gi\|... - gi\|47529513\|ref\|YP_020862.1\| competence-specific nuclease [Bacillus anthracis str. 'Ames Ancestor'],... gi\|47565884, gi\|... - gi\|47565884\|ref\|ZP_00236923.1\| DNA-entry nuclease [Bacillus cereus G9241], gi\|47557164\|gb\|EAL15493.1... gi\|118479213, gi... - gi\|118479213\|ref\|YP_896364.1\| competence-specific nuclease [Bacillus thuringiensis str. Al Hakam], g... gi\|65321396, gi\|... - gi\|65321396\|ref\|ZP_00394355.1\| hypothetical protein Bant_01004877 [Bacillus anthracis str. A2012], r... gi\|196045897, gi... - gi\|196045897\|ref\|ZP_03113126.1\| competence-specific nuclease [Bacillus cereus 03BB108], gi\|196023337... gi\|196030393, gi... - gi\|196038670\|ref\|ZP_03105978.1\| competence-specific nuclease [Bacillus cereus NVH0597-99], gi\|196030... gi\|218905139, gi... - gi\|218905139\|ref\|YP_002452973.1\| competence-specific nuclease [Bacillus cereus AH820], gi\|218535126\|... gi\|227816781, gi... - gi\|227816781\|ref\|YP_002816790.1\| competence-specific nuclease [Bacillus anthracis str. CDC 684], gi\|... gi\|228916644, gi... - gi\|228916644\|ref\|ZP_04080209.1\| DNA-entry nuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4... gi\|228830603, gi... - gi\|228929054\|ref\|ZP_04092084.1\| DNA-entry nuclease [Bacillus thuringiensis serovar pondicheriensis B... gi\|228824339, gi... - gi\|228935322\|ref\|ZP_04098145.1\| DNA-entry nuclease [Bacillus thuringiensis serovar andalousiensis BG... gi\|165871164, gi... - gi\|165871164\|ref\|ZP_02215814.1\| competence-specific nuclease [Bacillus anthracis str. A0488], gi\|164... gi\|228947726, gi... - gi\|228947726\|ref\|ZP_04110013.1\| DNA-entry nuclease [Bacillus thuringiensis serovar monterrey BGSC 4A... gi\|228690318, gi... - gi\|229093056\|ref\|ZP_04224184.1\| DNA-entry nuclease [Bacillus cereus Rock3-42], gi\|228690318\|gb\|EEL44... gi\|167512561, gi... - gi\|167639502\|ref\|ZP_02397773.1\| competence-specific nuclease [Bacillus anthracis str. A0193], gi\|167... gi\|229123528, gi... - gi\|229123528\|ref\|ZP_04252724.1\| DNA-entry nuclease [Bacillus cereus 95/8201], gi\|228659925\|gb\|EEL155... gi\|167633697, gi... - gi\|167633697\|ref\|ZP_02392021.1\| competence-specific nuclease [Bacillus anthracis str. A0442], gi\|167... gi\|229602900, gi... - gi\|229602900\|ref\|YP_002868305.1\| competence-specific nuclease [Bacillus anthracis str. A0248], gi\|22... gi\|170705870, gi... - gi\|170705870\|ref\|ZP_02896333.1\| competence-specific nuclease [Bacillus anthracis str. A0389], gi\|170... gi\|254683771 - gi\|254683771\|ref\|ZP_05147631.1\| competence-specific nuclease [Bacillus anthracis str. CNEVA-9066] gi\|170668852, gi... - gi\|170687235\|ref\|ZP_02878453.1\| competence-specific nuclease [Bacillus anthracis str. A0465], gi\|170... gi\|254721607 - gi\|254721607\|ref\|ZP_05183396.1\| competence-specific nuclease [Bacillus anthracis str. A1055] gi\|195991580, gi... - gi\|196035931\|ref\|ZP_03103333.1\| competence-specific nuclease [Bacillus cereus W], gi\|195991580\|gb\|ED... gi\|254736117 - gi\|254736117\|ref\|ZP_05193823.1\| competence-specific nuclease [Bacillus anthracis str. Western North ... gi\|172081930, gi... - gi\|177652595\|ref\|ZP_02935011.1\| competence-specific nuclease [Bacillus anthracis str. A0174], gi\|172... gi\|254744007 - gi\|254744007\|ref\|ZP_05201690.1\| competence-specific nuclease [Bacillus anthracis str. Kruger B] gi\|254754213 - gi\|254754213\|ref\|ZP_05206248.1\| competence-specific nuclease [Bacillus anthracis str. Vollum] gi\|254758096 - gi\|254758096\|ref\|ZP_05210123.1\| competence-specific nuclease [Bacillus anthracis str. Australia 94]	220.0	[0..13]	[136..19]
gi\|42820789 - gi\|42820789\|emb\|CAE02625.1\| NucA [Bacillus amyloliquefaciens] gi\|42820789 - gi\|42820789\|emb\|CAE02625.1\| NucA [Bacillus amyloliquefaciens FZB42]	220.0	[0..22]	[136..34]
gi\|49480836, gi\|... - gi\|49480836\|ref\|YP_038065.1\| competence-specific nuclease [Bacillus thuringiensis serovar konkukian ...	220.0	[0..14]	[136..20]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWMAGLFL AAAVLLCLMV PQQIQGASSY DKVLYFPLSR YPETGSHIRD AIAEGHPDIC  60
   61 TIDRDGADKR REESLKGIPT KPGYDRDEWP MAVCEEGGAG ADVRYVTPSD NRGAGSWVGN 120
  121 QMSSYPDGTR VLFIVQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits