YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PTJC_BACSU, PTCC...
Organism: Bacillus subtilis
Length: 452 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTJC_BACSU, PTCC....

Description E-value Query
Range
Subject
Range
gi|89086740, gi|... - gi|89098495|ref|ZP_01171378.1| phosphotransferase system (PTS) lichenan-specific enzyme IIC componen...
274.0 [0..1] [445..1]

Back

Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVNQILEE KVMPIAGRIA GQRHLQALRD GIILTMPLII IGSFFLIIGN LPIPGYAEFM  60
   61 AKTFGSSWSE KLAYPVDATF EIMGLVAAFG IAYRLAEKYG VDALSAGAIS LAAFLLATPY 120
  121 QVPFMPDGAT KEIMVGGGIP LSLMGSKGLF VAM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [154-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIAMVSTEIY RLIIQRNLVF KMPDGVPPAV SKSFVALIPG FAVIFLIWAA RLIVEATPFE  60
   61 SLHNIVSVLL GTPLSILGGS LGGSLVAEAV KMLLWACGLH GANIVGGVMA PIWYGAMDAN 120
  121 RIAFQAGEEL PKIFTQQFFD IWVNIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [300-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGATLALVV TMFLRARSKQ MKQLGKLAVG PAIFNINEPI IFGMPIVMNP MLLLPFIITP  60
   61 LVTVTLTYIG MSTGLVAKPA GIAVPWTMPP IFSGYLATGG KVSGAVMQAI NIAVSFVVYY 120
  121 PFFRMWDKQK LKEENDLELV QTPAATDDKE AAL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle