YRC Public Data Repository - Protein Structure Prediction

Protein:	PTCA_BACSU, PTJA...
Organism:	Bacillus subtilis
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTCA_BACSU, PTJA....

Description	E-value	Query Range	Subject Range
gi\|242232464, gi... - gi\|242255981\|ref\|ZP_04800879.1\| phosphotransferase system PTS lactose/cellobiose-specific IIA subuni... gi\|114806629, gi... - gi\|167038933\|ref\|YP_001661918.1\| phosphotransferase system PTS, lactose/cellobiose-specific IIA subu...	136.0	[0..3]	[109..1]
gi\|20515322, gi\|... - gi\|20806853\|ref\|NP_622024.1\| phosphotransferase system cellobiose-specific component IIA [Thermoanae... gi\|20806853 - gi\|20806853\|ref\|NP_622024.1\| Phosphotransferase system cellobiose-specific component IIA [Thermoanae...	133.0	[0..3]	[109..1]
gi\|52005585, gi\|... - gi\|52787764\|ref\|YP_093593.1\| LicA [Bacillus licheniformis ATCC 14580], gi\|52350266\|gb\|AAU42900.1\| Li...	132.0	[0..1]	[109..1]
gi\|81429146, gi\|... - gi\|81429146\|ref\|YP_396147.1\| putative cellobiose-specific phosphotransferasesystem, enzyme IIA [Lact...	131.0	[0..2]	[103..3]
gi\|241885081, gi... - gi\|241902619\|ref\|ZP_04787352.1\| phosphotransferase system PTS lactose/cellobiose-specific IIA subuni... gi\|255337184, gi... - gi\|255337184\|ref\|ZP_05378065.1\| phosphotransferase system PTS lactose/cellobiose-specific IIA subuni... gi\|76795406, gi\|... - gi\|76795406\|ref\|ZP_00777779.1\| Phosphotransferase system PTS, lactose/cellobiose-specific IIA subuni...	131.0	[0..3]	[109..1]
gi\|167529327, gi... - gi\|167635284\|ref\|ZP_02393599.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|167640461, gi... - gi\|167640461\|ref\|ZP_02398724.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|170687995, gi... - gi\|170687995\|ref\|ZP_02879208.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|170127345, gi... - gi\|170707788\|ref\|ZP_02898239.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|51973821, gi\|... - gi\|52140352\|ref\|YP_086477.1\| PTS system, cellobiose-specific IIA component (phosphotransferase enzym... gi\|177652940, gi... - gi\|177652940\|ref\|ZP_02935267.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|190561157, gi... - gi\|190567741\|ref\|ZP_03020653.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis Ts... gi\|196029671, gi... - gi\|196039511\|ref\|ZP_03106816.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus NVH05... gi\|196023464, gi... - gi\|196045633\|ref\|ZP_03112863.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB1... gi\|218537844, gi... - gi\|218906389\|ref\|YP_002454223.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus AH82... gi\|222098670, gi... - gi\|222098670\|ref\|YP_002532728.1\| PTS system, cellobiose-specific IIA component (phosphotransferase e... gi\|49188048, gi\|... - gi\|49188048\|ref\|YP_031301.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|49481192, gi\|... - gi\|49481192\|ref\|YP_039203.1\| PTS system, cellobiose-specific IIA component (phosphotransferase enzym... gi\|42740301, gi\|... - gi\|42784369\|ref\|NP_981616.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus ATCC 109... gi\|254757097 - gi\|254757097\|ref\|ZP_05209125.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|47530761, gi\|... - gi\|47530761\|ref\|YP_022110.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|254744343 - gi\|254744343\|ref\|ZP_05202023.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|21397675, gi\|... - gi\|65317184\|ref\|ZP_00390143.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|254737016, gi... - gi\|254737016\|ref\|ZP_05194721.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|30259915, gi\|... - gi\|30265238\|ref\|NP_847615.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|254724362 - gi\|254724362\|ref\|ZP_05186146.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|254686364 - gi\|254686364\|ref\|ZP_05150223.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|229604727, gi... - gi\|229604727\|ref\|YP_002869432.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis s... gi\|229187426, gi... - gi\|229187426\|ref\|ZP_04314569.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|228689075, gi... - gi\|229094308\|ref\|ZP_04225383.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|227817972, gi... - gi\|227817972\|ref\|YP_002817981.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis s... gi\|225785885, gi... - gi\|225867179\|ref\|YP_002752557.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB...	130.0	[0..2]	[103..1]
gi\|218543335, gi... - gi\|218900332\|ref\|YP_002448743.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus G984... gi\|228961452, gi... - gi\|228961452\|ref\|ZP_04123064.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|206970429, gi... - gi\|206970429\|ref\|ZP_03231382.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus AH113... gi\|228903686, gi... - gi\|228903686\|ref\|ZP_04067806.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|229050875, gi... - gi\|229050875\|ref\|ZP_04194427.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|30023247, gi\|... - gi\|30023247\|ref\|NP_834878.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillus c... gi\|228968330, gi... - gi\|228968330\|ref\|ZP_04129326.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|75759426, gi\|... - gi\|75759426\|ref\|ZP_00739520.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillus... gi\|228602047, gi... - gi\|229181472\|ref\|ZP_04308800.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ...	129.0	[0..2]	[103..1]
gi\|47553315, gi\|... - gi\|47570016\|ref\|ZP_00240678.1\| PTS system, IIA component [Bacillus cereus G9241], gi\|47569710\|ref\|ZP...	129.0	[0..2]	[103..1]
gi\|116105683, gi... - gi\|62514318\|ref\|ZP_00385824.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	129.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEEMEQIIF QIILHGGNGR SSAMEAIAAA KSGDAEEARK KLQDAAEELS KAHHYQTELI  60
   61 QNEAGGEKTE MTLLMVHAQD HLMNAMTVKD MAAEIIELYE KITEQRGASI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1e2aA
Description:	Enzyme IIa from lactose specific PTS, IIa-lac
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits