YRC Public Data Repository - Protein Structure Prediction

Protein:	BOFA_BACSU
Organism:	Bacillus subtilis
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BOFA_BACSU.

Description	E-value	Query Range	Subject Range
gi\|152022627, gi... - gi\|89203318\|ref\|ZP_01181999.1\| SigmaK-factor processing regulatory BofA [Bacillus cereus subsp. cyto...	85.0	[0..1]	[87..17]
gi\|42735021, gi\|... - gi\|42779106\|ref\|NP_976353.1\| sigma-k factor processing regulatory protein BofA [Bacillus cereus ATCC...	79.0	[0..1]	[87..1]
gi\|228652429, gi... - gi\|229131034\|ref\|ZP_04259949.1\| Sigma-K factor processing regulatory protein [Bacillus cereus BDRD-S... gi\|229009537, gi... - gi\|229009537\|ref\|ZP_04166766.1\| Sigma-K factor processing regulatory protein [Bacillus mycoides DSM ... gi\|163938035, gi... - gi\|89208554\|ref\|ZP_01187054.1\| SigmaK-factor processing regulatory BofA [Bacillus weihenstephanensis... gi\|229165016, gi... - gi\|229165016\|ref\|ZP_04292814.1\| Sigma-K factor processing regulatory protein [Bacillus cereus AH621]...	79.0	[0..1]	[87..1]
gi\|52145187, gi\|... - gi\|52145187\|ref\|YP_081641.1\| sigma-K factor processing regulatory protein [Bacillus cereus E33L], gi... gi\|47500426, gi\|... - gi\|47525278\|ref\|YP_016627.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthracis s... gi\|49183061, gi\|... - gi\|49183061\|ref\|YP_026313.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthracis s... gi\|30260217, gi\|... - gi\|30260217\|ref\|NP_842594.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthracis s... gi\|229136871, gi... - gi\|229136871\|ref\|ZP_04265500.1\| Sigma-K factor processing regulatory protein [Bacillus cereus BDRD-S... gi\|228776462, gi... - gi\|228983282\|ref\|ZP_04143497.1\| Sigma-K factor processing regulatory protein [Bacillus thuringiensis... gi\|228846893, gi... - gi\|228912766\|ref\|ZP_04076415.1\| Sigma-K factor processing regulatory protein [Bacillus thuringiensis... gi\|227005220, gi... - gi\|227812700\|ref\|YP_002812709.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthrac... gi\|254724168 - gi\|254724168\|ref\|ZP_05185953.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|254686615 - gi\|254686615\|ref\|ZP_05150474.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|229269011, gi... - gi\|229604603\|ref\|YP_002864678.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthrac... gi\|228629675, gi... - gi\|229153806\|ref\|ZP_04281938.1\| Sigma-K factor processing regulatory protein [Bacillus cereus ATCC 4... gi\|170688923, gi... - gi\|170688923\|ref\|ZP_02880125.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|254761656 - gi\|254761656\|ref\|ZP_05213674.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|170127511, gi... - gi\|170707515\|ref\|ZP_02897968.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|254751186 - gi\|254751186\|ref\|ZP_05203225.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|167529514, gi... - gi\|167635040\|ref\|ZP_02393357.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|254744195 - gi\|254744195\|ref\|ZP_05201876.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|167642051, gi... - gi\|167642051\|ref\|ZP_02400278.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|254736997 - gi\|254736997\|ref\|ZP_05194702.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|164711030, gi... - gi\|165873232\|ref\|ZP_02217843.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|217064379, gi... - gi\|217957603\|ref\|YP_002336145.1\| sigma-k factor processing regulatory protein BofA [Bacillus cereus ... gi\|196036389, gi... - gi\|196036389\|ref\|ZP_03103786.1\| sigma-k factor processing regulatory protein BofA [Bacillus cereus W... gi\|206743443, gi... - gi\|206978351\|ref\|ZP_03239225.1\| sigma-k factor processing regulatory protein BofA [Bacillus cereus H... gi\|172080020, gi... - gi\|177655680\|ref\|ZP_02937005.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci... gi\|190559561, gi... - gi\|190569339\|ref\|ZP_03022231.1\| sigma-k factor processing regulatory protein BofA [Bacillus anthraci...	79.0	[0..1]	[87..1]
gi\|196027218, gi... - gi\|196041963\|ref\|ZP_03109250.1\| sigma-k factor processing regulatory protein BofA [Bacillus cereus N... gi\|228931529, gi... - gi\|228931529\|ref\|ZP_04094437.1\| Sigma-K factor processing regulatory protein [Bacillus thuringiensis... gi\|49330887, gi\|... - gi\|49479331\|ref\|YP_034382.1\| sigma-K factor processing regulatory protein [Bacillus thuringiensis se...	77.0	[0..1]	[87..1]
gi\|7007423 - gi\|7007423\|dbj\|BAA90840.1\| SigmaK-factor processing regulatory protein BofA [Bacillus halodurans]	77.0	[0..1]	[87..11]
gi\|30018299, gi\|... - gi\|30018299\|ref\|NP_829930.1\| SigmaK-factor processing regulatory protein BofA [Bacillus cereus ATCC ... gi\|228860872, gi... - gi\|228898780\|ref\|ZP_04063064.1\| SigmaK-factor processing regulatory protein BofA [Bacillus thuringie... gi\|228970215, gi... - gi\|228970215\|ref\|ZP_04130876.1\| SigmaK-factor processing regulatory protein BofA [Bacillus thuringie... gi\|228796580, gi... - gi\|228963124\|ref\|ZP_04124295.1\| SigmaK-factor processing regulatory protein BofA [Bacillus thuringie... gi\|228809118, gi... - gi\|228950575\|ref\|ZP_04112711.1\| SigmaK-factor processing regulatory protein BofA [Bacillus thuringie... gi\|228937329, gi... - gi\|228937329\|ref\|ZP_04099977.1\| SigmaK-factor processing regulatory protein BofA [Bacillus thuringie... gi\|229107713, gi... - gi\|229107713\|ref\|ZP_04237351.1\| SigmaK-factor processing regulatory protein BofA [Bacillus cereus Ro... gi\|228706023, gi... - gi\|229077300\|ref\|ZP_04209983.1\| SigmaK-factor processing regulatory protein BofA [Bacillus cereus Ro... gi\|228715344, gi... - gi\|229067791\|ref\|ZP_04201110.1\| SigmaK-factor processing regulatory protein BofA [Bacillus cereus F6... gi\|228976785, gi... - gi\|228976785\|ref\|ZP_04137199.1\| SigmaK-factor processing regulatory protein BofA [Bacillus thuringie... gi\|229176627, gi... - gi\|229176627\|ref\|ZP_04304033.1\| SigmaK-factor processing regulatory protein BofA [Bacillus cereus 17... gi\|218895163, gi... - gi\|218895163\|ref\|YP_002443574.1\| sigma-k factor processing regulatory protein BofA [Bacillus cereus ... gi\|229142832, gi... - gi\|229142832\|ref\|ZP_04271276.1\| SigmaK-factor processing regulatory protein BofA [Bacillus cereus BD... gi\|229125544, gi... - gi\|229125544\|ref\|ZP_04254578.1\| SigmaK-factor processing regulatory protein BofA [Bacillus cereus BD... gi\|206732404, gi... - gi\|206972684\|ref\|ZP_03233624.1\| sigma-k factor processing regulatory protein BofA [Bacillus cereus A... gi\|218234548, gi... - gi\|218234548\|ref\|YP_002364877.1\| sigma-k factor processing regulatory protein BofA [Bacillus cereus ...	77.0	[0..1]	[87..1]
gi\|89084320, gi\|... - gi\|89100949\|ref\|ZP_01173795.1\| hypothetical protein B14911_15471 [Bacillus sp. NRRL B-14911], gi\|890...	75.0	[0..1]	[87..4]
gi\|15612601, gi\|... - gi\|15612601\|ref\|NP_240904.1\| inhibitor of the pro-sigma K processing machinery [Bacillus halodurans ... gi\|25494004 - pir\|\|F83654 pro-sigma K processing inhibitor bofA [imported] - Bacillus halodurans (strain C-125)	72.0	[0..1]	[87..4]
gi\|52783881, gi\|... - gi\|52783881\|ref\|YP_089710.1\| BofA [Bacillus licheniformis ATCC 14580], gi\|52346383\|gb\|AAU39017.1\| Bo...	72.0	[0..1]	[86..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPIFIIGII LGLVILLFLS GSAAKPLKWI GITAVKFVAG ALLLVCVNMF GGSLCIHVPI  60
   61 NLVTTAISGI LGIPGIAALV VIKQFII

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.481486
Match:	PF07441.2
Description:	No description for PF07441.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.941	N/A	N/A	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits