YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ARLY_BACSU
Organism: Bacillus subtilis
Length: 461 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARLY_BACSU.

Description E-value Query
Range
Subject
Range
ARLY_PSESM - Argininosuccinate lyase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=argH PE=3 SV=1
ARLY_PSESM - Argininosuccinate lyase OS=Pseudomonas syringae pv. tomato GN=argH PE=3 SV=1
519.0 [0..5] [459..10]

Back

Predicted Domain #1
Region A:
Residues: [1-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLWGGRFQ KTPEKWVDEF GASISFDQNL VAEDITGSLA HAAMLKKCGI LTAEEELKIR  60
   61 EGLNTLLQKA EEGALEFSVD YEDIHLNIEK MLIDEIGPLG GKLHTGRSRN DQVATDMHLY 120
  121 LKNHVGHIIE LIEAFQSALI EKAEANVETI LPGYTHLQRA QPISFAHHLL AYFWMLERDK 180
  181 ERFQDSMKRI NKSPLGCGAL AGTTFPIDRD YSAELLGFDA IYENSLDGVS DRDFILEFLS 240
  241 NSSMLMMHLS RFSEEIILWC SQEFKFIELD DTYATGSSMM PQKKNPDMAE LIRGKTGRVY 300
  301 GDMMGLFTIM KGLPLAYNKD LQEDKEGMFD TVKTVEGSLQ IFTGMIQTMT VNKDVMKQAT 360
  361 KQDFSNATEL ADYLAKKGMP FREAHEVVGK LVYTCIERGI YLSDMPFGEF QQASTLFEED 420
  421 IYTVLDPYYA VEKRMSAGGT GFKQVEQALE KAKACVAAGV C

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 132.0
Match: 1tj7A
Description: Structure determination and refinement at 2.44 A resolution of Argininosuccinate lyase from E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
amidine-lyase activity 3.84281419858187 bayes_pls_golite062009
argininosuccinate lyase activity 3.58328346705456 bayes_pls_golite062009
catalytic activity 2.51282259572665 bayes_pls_golite062009
lyase activity 2.31268471569846 bayes_pls_golite062009
carbon-nitrogen lyase activity 2.2046475419807 bayes_pls_golite062009
fumarate hydratase activity 1.8220456742683 bayes_pls_golite062009
histidine ammonia-lyase activity 0.948129236753279 bayes_pls_golite062009
binding 0.616567403608599 bayes_pls_golite062009
ammonia-lyase activity 0.491229595527877 bayes_pls_golite062009
protein binding 0.110986062813054 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle