YRC Public Data Repository - Protein Structure Prediction

Protein:	rps2402
Organism:	Schizosaccharomyces pombe
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps2402.

Description	E-value	Query Range	Subject Range
gi\|114631371 - gi\|114631371\|ref\|XP_001150938.1\| PREDICTED: hypothetical protein LOC466117 isoform 5 [Pan troglodyte...	221.0	[0..1]	[134..1]
gi\|71013789, gi\|... - gi\|71013789\|ref\|XP_758662.1\| hypothetical protein UM02515.1 [Ustilago maydis 521], ref\|XP_400130.1\| ...	199.0	[0..2]	[132..16]
gi\|109114378 - gi\|109114378\|ref\|XP_001102044.1\| PREDICTED: similar to ribosomal protein S24 isoform 1 [Macaca mulat...	192.0	[0..1]	[133..1]
gi\|37779110 - gi\|37779110\|gb\|AAP20215.1\| 40S ribosomal protein S24 [Pagrus major]	187.0	[0..1]	[132..1]
RS24_ICTPU - 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1	186.0	[0..1]	[132..1]
gi\|94400218 - gi\|94400218\|ref\|XP_622670.3\| PREDICTED: similar to ribosomal protein S24 [Mus musculus]	185.0	[0..1]	[134..1]
RS24_ORYLA - 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1	185.0	[0..1]	[132..1]
RS24_TAKRU - 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1	185.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAVTIRTR KFMTNRLLQR KQMVVDILHP GKANLSKNEI REKLAQMYKT DSECVQAFGL  60
   61 RTHFGGGRST GFALIYDSTE SMKKFEPHYR LVRVGQAEPI QKVARQQRKQ RKNRGKKVFG 120
  121 TGKRLAKRKS KQQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1xn9A
Description:	Solution Structure of Methanosarcina mazei Protein RPS24E: The Northeast Structural Genomics Consortium Target MaR11
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits