YRC Public Data Repository - Protein Structure Prediction

Protein:	trx1
Organism:	Schizosaccharomyces pombe
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trx1.

Description	E-value	Query Range	Subject Range
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	135.0	[0..2]	[103..43]
gi\|114626146 - gi\|114626146\|ref\|XP_001142154.1\| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF) (Surfa...	134.0	[0..1]	[103..219]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	134.0	[0..2]	[103..43]
gi\|116057647 - gi\|116057647\|emb\|CAL53850.1\| Thioredoxin (ISS) [Ostreococcus tauri]	132.0	[0..1]	[103..112]
gi\|126097342, gi... - gi\|126208550\|ref\|YP_001053775.1\| thioredoxin [Actinobacillus pleuropneumoniae L20], gi\|126097342\|gb\|... gi\|32035159 - gi\|32035159\|ref\|ZP_00135199.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Actinobacillus p... gi\|165976501, gi... - gi\|165976501\|ref\|YP_001652094.1\| thioredoxin [Actinobacillus pleuropneumoniae serovar 3 str. JL03], ... gi\|190150405, gi... - gi\|190150405\|ref\|YP_001968930.1\| thioredoxin [Actinobacillus pleuropneumoniae serovar 7 str. AP76], ...	131.0	[0..1]	[103..1]
gi\|25067747 - gi\|25067747\|gb\|AAN65341.1\| thioredoxin/transketolase fusion protein [synthetic construct]	131.0	[0..2]	[103..5]
gi\|32477354, gi\|... - gi\|32477354\|ref\|NP_870348.1\| thioredoxin 1 [Rhodopirellula baltica SH 1], gi\|32447905\|emb\|CAD77425.1...	130.0	[0..2]	[94..6]
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	130.0	[0..2]	[103..6]
gi\|575449 - gi\|575449\|gb\|AAA67270.1\| Derived from E. coli thioredoxin gene; normal translation termination codon...	130.0	[0..2]	[103..5]
gi\|33149043, gi\|... - gi\|33152818\|ref\|NP_874171.1\| thioredoxin [Haemophilus ducreyi 35000HP], gi\|33149043\|gb\|AAP96560.1\| t...	129.0	[0..1]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKQVSDSSE FKSIVCQDKL VVVDFFATWC GPCKAIAPKF EQFSNTYSDA TFIKVDVDQL  60
   61 SEIAAEAGVH AMPSFFLYKN GEKIEEIVGA NPAKLEASIK ANL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.221849
Match:	2i9hA
Description:	No description for 2i9hA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits