YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl301
Organism:	Schizosaccharomyces pombe
Length:	388 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl301.

Description	E-value	Query Range	Subject Range
gi\|60654345 - gi\|60654345\|gb\|AAX29863.1\| ribosomal protein L3 [synthetic construct]	587.0	[0..1]	[386..1]
gi\|74181618 - gi\|74181618\|dbj\|BAE30074.1\| unnamed protein product [Mus musculus]	587.0	[0..1]	[386..1]
gi\|57698 - gi\|57698\|emb\|CAA44095.1\| ribosomal protein L3 [Rattus rattus] RL3_RAT - 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3	587.0	[0..1]	[386..1]
gi\|90076640, gi\|... - gi\|90076640\|dbj\|BAE88000.1\| unnamed protein product [Macaca fascicularis], gi\|90076620\|dbj\|BAE87990.... gi\|109094341 - gi\|109094341\|ref\|XP_001095608.1\| PREDICTED: similar to ribosomal protein L3 isoform a [Macaca mulatt... gi\|109451472, gi... - gi\|109452068\|emb\|CAK54896.1\| RPL3 [synthetic construct], gi\|109451472\|emb\|CAK54597.1\| RPL3 [syntheti... HGNC:10332\|MIM:6... - protein L3 RPL3 - ribosomal protein L3	587.0	[0..1]	[386..1]

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Predicted Domain #1

Region A:
Residues: [1-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHCKFEQPR HGSLGFLPRK RASRQRGKVK AFPKDDASKP VHLTAFLGYK AGMTHIVRDL  60
   61 DRPGSKMHKR EILEAVTVIE TPPMVVVGVV GYVETPRGLR SLTTVWAEHL SEEVKRRFYK 120
  121 NWFKSKKKAF TKYAKKYAES TQSINRELER IKKYCSVVRV LAHTQIRKTP LAQKKAHLME 180
  181 IQVNGGSVAD KVEWAREHFE KTVDIKSTFE QNEMIDVIGV TRGKGNEGTT ARWGTKRLPR 240
  241 KTHRGLRKVA CIGAWHPANV QWTVARAGNA GYMHRTQLNS KIYRIGAGDD AKNASTDFDA 300
  301 TEKRITPMGG FVRYGVVEND FVMLNGATPG PVKRVLTLRK SLLTHTSRKA LEPVSLKWID 360
  361 TASKFGHGRF QTPAEAKQFL GTLKKDVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	142.0
Match:	1s1iC
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits