YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl3702
Organism:	Schizosaccharomyces pombe
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl3702.

Description	E-value	Query Range	Subject Range
gi\|72538603, gi\|... - gi\|72538603\|gb\|EAL32366.2\| GA21535-PA [Drosophila pseudoobscura], gi\|125983088\|ref\|XP_001355309.1\| G...	172.0	[0..1]	[90..288]
gi\|74009722 - gi\|74009722\|ref\|XP_850092.1\| PREDICTED: similar to ribosomal protein L37 [Canis familiaris]	140.0	[0..1]	[88..58]
gi\|159127942 - gi\|159127942\|gb\|EDP53057.1\| 60S ribosomal protein L37 [Aspergillus fumigatus A1163] gi\|66852567, gi\|... - gi\|71000493\|ref\|XP_754930.1\| 60S ribosomal protein L37 [Aspergillus fumigatus Af293], gi\|66852567\|gb...	131.0	[0..3]	[89..69]
gi\|91090071 - gi\|91090071\|ref\|XP_969650.1\| PREDICTED: similar to Probable 60S ribosomal protein L37-A [Tribolium c...	122.0	[0..2]	[90..29]
FBpp0303429, RpL... - The gene Ribosomal protein L37a is referred to in FlyBase by the symbol Dmel\RpL37a (CG9091, FBgn003...	121.0	[0..1]	[91..1]
gi\|90305412, gi\|... - gi\|90305412\|gb\|EAS35043.1\| hypothetical protein CIMG_00397 [Coccidioides immitis RS], gi\|119192040\|r... gi\|240106250 - gi\|240106250\|gb\|EER24443.1\| 60S ribosomal protein L37, putative [Coccidioides posadasii C735 delta S...	120.0	[0..1]	[89..1]
gi\|4262019, gi\|2... - gi\|4262019\|gb\|AAD14319.1\|S79980_1 ribosomal protein L37 [Bos taurus], gi\|2829674\|sp\|P79244\|RL37_BOVI...	119.0	[0..1]	[90..1]
gi\|38047707, gi\|... - gi\|38048279\|gb\|AAR10042.1\| similar to Drosophila melanogaster CG9091 [Drosophila yakuba], gi\|3804770...	119.0	[0..1]	[89..1]
gi\|115474631, gi... - gi\|115474631\|ref\|NP_001060912.1\| Os08g0128500 [Oryza sativa (japonica cultivar-group)], gi\|113622881...	119.0	[0..2]	[91..21]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKGTQSFGM RHNKSHTICR RCGKRSFHIQ KSTCACCGYP AAKTRSYNWG AKAKRRRTTG  60
   61 TGRMSYLKKV HRSFKNGFRS GKPAAAVAAS A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1s1iY
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits