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View Structure Prediction Details

Protein: fbxc-21
Organism: Caenorhabditis elegans
Length: 415 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbxc-21.

Description E-value Query
Range
Subject
Range
CE11390 - WBGene00019041 status:Partially_confirmed TR:Q9TZG2 protein_id:AAC67487.1
340.0 [0..1] [414..23]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSKWLEPV LRYLRAGTRF QLSERCPSIR PLEKNTVLHI KLLQLCQDAV NIDDSLLYEI  60
   61 SVVEDHVHPI GLDLDEHCSI DMDIQVEQKQ NEILIDNRSE ELARANIDYE QNLITREKRR 120
  121 IA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [123-240]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLPNEEERVK PRAALDRRTM IHQMKSLRLI SSITNIPPLT VGLNPIEHHM SFSIHRTKSG  60
   61 NDGYLVKITT IHEERLTYDK KLHDAQFYIL EKLFGGRSCI NVLTLSIDSI GILRIPSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [241-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNLKFQGLDC YEYEPDNILK ALRPFLTPSV LPLKTLQICS VPEMPHPIVE SAEELTLITK  60
   61 DRLITLTNLK VTVLSYD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [318-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVEEPAEL IKKWLRDGKQ IGTVFTLSSF KEIKSKILLD DVKRRFKEKI VRVEESNGDL  60
   61 TSVTLSMNDS AELVIQRDLV QNTWKVILKV QSSREEEI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle