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View Structure Prediction Details

Protein: atp-3
Organism: Caenorhabditis elegans
Length: 228 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp-3.

Description E-value Query
Range
Subject
Range
gi|57108786 - gi|57108786|ref|XP_535587.1| PREDICTED: similar to ATP synthase O subunit, mitochondrial precursor (...
210.0 [0..14] [227..2]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFIPSKPL YLYLTILHEK VMAQLMKRGF STSAALAKAQ LVKTPIQVHG VEGRYAAALY  60
   61 SAGHKQNKLD QISTDLNNVR SVYKDNKKFQ EFVLDPTLKA NKKKTAIEAI STKLGLTKET 120
  121 GNFLGLLAEN GRLNKLESVV SSFESIMRAH RGELFVQVTS AEEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.154902
Match: 2bo5A
Description: Bovine oligomycin sensitivity conferral protein N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [165-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSNQKALSD ALSKIGKSGQ KLTVTYAVKP SILGGLVVTI GDKYVDLSIA SRVKKYKDAL  60
   61 ATAI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.981
Match: 2dm9A
Description: No description for 2dm9A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle