YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: lips-17
Organism: Caenorhabditis elegans
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-17.

Description E-value Query
Range
Subject
Range
lips-15 - status:Confirmed UniProt:Q9NAK4 protein_id:CAB54398.1
185.0 [0..3] [279..5]

Back

Predicted Domain #1
Region A:
Residues: [1-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLIFLCFLC FSSVSSDFSP SFNKFLIDNY GKGINDLLAR RDIGPHGSYG GGTHDGSKRT  60
   61 SKQAVILVHG ITNTAGTFQG HRHHLLNAGW SEELVFATTY GDGGKTMAPM VDMKCQYVKQ 120
  121 VRYMIQVVAA FTHRKVDVIG YSLGSPIARK AILGGACVET GENLGPPLTA LIDTYVSVAG 180
  181 ANRGSFLCAL PFPGACNMNN GLSCMSAYIK DINSRPRYEG KYIFSIYGPG DDKVGYRNTC 240
  241 GQLCSQIAGA NGEFERPGNH DDVLIKTAAL QFKLIDTHAG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.522879
Match: 1u2eA
Description: Crystal Structure of the C-C bond hydrolase MhpC
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle