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View Structure Prediction Details

Protein: bath-2
Organism: Caenorhabditis elegans
Length: 304 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bath-2.

Description E-value Query
Range
Subject
Range
bath-1 - status:Confirmed UniProt:Q9N5Q0 protein_id:AAF39857.1
204.0 [0..5] [303..3]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVKREFEL SHVFKDVSKL EDGNTFYGPE EEHFNVQWRI VLIHQKEDVA VFLRYLHPKN  60
   61 EQAPWKIDSE FTLKLSNSSG KSVTKTGSDI WNSYDALGFC DVFEWDSLLK DYLIDDVIII 120
  121 EVAVKIKNMS G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.30103
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [132-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPKKKLKSFE RSNEEFSDVI LAVGDKKFFV LRKFLASHST YFETLLLGNF AEADKSEVKL  60
   61 QDINSTDFQN LMEVRYGEYA IDEETVDGIL HLAHLY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 2nn2A
Description: No description for 2nn2A was found.

Predicted Domain #3
Region A:
Residues: [228-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMPFPIKRCE EFLVDSSEKS TKEKLKVAKK YQLENLKASC LAKINTLEEI KAALAGDLDE  60
   61 MDPSVVHALF RKSLALH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.522879
Match: 2eqxA
Description: No description for 2eqxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle