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View Structure Prediction Details

Protein: CE35880
Organism: Caenorhabditis elegans
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35880.

Description E-value Query
Range
Subject
Range
gi|39579516, gi|... - gi|39579516|emb|CAE56341.1| Hypothetical protein CBG24013 [Caenorhabditis briggsae], gi|187040564|em...
418.0 [0..30] [322..42]

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Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKNGHLFLL TNLKIVRKQS ADRSKNRIIF QAFAINFIVI LYYYGMASEI RQLRDNHLDF  60
   61 IQPYVNIRSD LFIAPKYKIL SCGIRKSMSQ LLINIMCLLH NETEFQNQNR SLNDTWMSER 120
  121 VCSHKDPEFH IPQKNVEQYQ NLTKFAFIRD PFDRFISFYL HVCKNDNGCW DCGDNMRCVV 180
  181 RNVYKSLKSY ENDP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [195-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEASSSSIDR HAAPITWNCN FQETFSQYHL IKIGFDYQSR HAAITQLTDI LYTNRVSDTL  60
   61 ITKISNESMT GETLHGTHKS VGRVQAEQQV NEDSVVREYL HKIYFFDYLI FNFDTNHLDD 120
  121 EYKQLLTSWK LFK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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