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View Structure Prediction Details

Protein: atad-3
Organism: Caenorhabditis elegans
Length: 595 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atad-3.

Description E-value Query
Range
Subject
Range
gi|7378614, gi|1... - gi|7378614|emb|CAB83290.1| transitional endoplasmic reticulum ATPase [Arabidopsis thaliana], gi|1126...
316.0 [0..29] [591..222]

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Predicted Domain #1
Region A:
Residues: [1-595]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWLFGVQKN ATPQIPDDFQ AGAAPGGPQQ PGQGQRQEGN SKMAYSFDST ALERAAKAAR  60
   61 DLEKFPNAKE ALELSRMQEV TRQKEVENET KKIEAQLANM KSEHIRVAEE ERRKTLGEET 120
  121 KHAHSRAEYQ DQLARKRAEE ELAMKARMQE ESLRKQEESV KKQEQLRKQT IEHELALKHK 180
  181 YELEKIDAET RARAKAARDN RDVNLEQMKL HEEENRKTVI EKIKTSGELI GSGLNQFLND 240
  241 KTKIAAAVGG LTALAVGWYT AKRGTGVTAR YIESRLGKPS LVRETSRITP LEVLKHPIKS 300
  301 VQMMTRQKKD PLNGVVLPPA LERRLRDIAI TTSNTKRNNG LFRNVMFYGP PGTGKTLFAK 360
  361 SLAQHSGLDY AVLTGGDIAP LGRDGVSAIH KVFDWASKSR KGLIVFIDEA DAFLQKRSKN 420
  421 GMSEDTRAAL NAFLFRTGEQ SRKFMLVVAS NQPEQFDWAV NDRFDQLVEF TLPGMEERER 480
  481 ILLQYFNEHI VTPATSGSRS QRLKLDNFDW VAKCNEVAKK TSGMSGRELS KLVIGWQASA 540
  541 YASETGVLTE AIVDRNTADA MVQHEHKMEW LEKEQLKARN QEVKFGTTLK RETAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.522879
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle