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View Structure Prediction Details

Protein: CE35863
Organism: Caenorhabditis elegans
Length: 745 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35863.

Description E-value Query
Range
Subject
Range
CE35864 - status:Partially_confirmed UniProt:Q7JM05 protein_id:CAE48501.1
321.0 [0..1] [680..1]

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Predicted Domain #1
Region A:
Residues: [1-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISKKGKFWI SRVLVVCACA LLVYSFVALD ITPTPPTEEF GFKDGNQESS SSPRLVFMVI  60
   61 DAFRLSFLTS SKSPMSFTKS EITKKSAKLF DAYARMPTVT LPRITAYLTG TLPSFGTVLT 120
  121 NLATAEMKTA NWISRIQKIG KKVHFFGDDT WIRLLPRSFE KFEGVTSFFV SDYTDVDNNV 180
  181 TRHLDTELSN TNHSWDALIL HYLGLDHIGH SLGGSSSKIP EKLKEMDDVI GRIHKYLKSS 240
  241 TSVDQESYLI VCGDHGMTAA GSHGGASPDE TRVPVVIWKF GREEGNKNYG NQDDSLKQPP 300
  301 RIEQIDVSST IFDVFNMPIP IESYGISLIN YFSDDEEEYF EKQHNQFRRI VQAKHLAISD 360
  361 ICDENCDYSD KFIKSALKKW FLTVQSELIG SASEVPNKSL GVCVFLLLVA LTLSMGLW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.154902
Match: 2qzuA
Description: No description for 2qzuA was found.

Predicted Domain #2
Region A:
Residues: [419-623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLHLSKSDFF IFLINITYFA SSLIEEEHEI WYYLGSTVVA IRALRNFKIW NKTEVKSIFF  60
   61 LAFLHRIACS YTQSTRRRWI MDSSLLPPSI FSDTLDFQPN NLNTILNEYP IIVILTCSLF 120
  121 WMYGYKQSKF HIILPMVSHF LRLFELTQFN EVLMHFIRLS ILPISYSTGS VLAGCLPLLL 180
  181 AIVPVSQILL LLVIYNMGKL FSKLN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [624-745]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGSVEFVTLC MSSFFYTGNS NSLSTLSLTS AYVGLSSYQP ILVGLQLMLY TFSGPILFLC  60
   61 GCNASSCTSL LNHLFSYRIS SMCTSLICLY IFQNHLFIWS VYSPKVVYDM AHVIFFGLIG 120
  121 LL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle