YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: nhr-114
Organism: Caenorhabditis elegans
Length: 304 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-114.

Description E-value Query
Range
Subject
Range
nhr-114 - status:Confirmed UniProt:Q9GUI3 protein_id:AAG23368.3
203.0 [0..1] [304..1]

Back

Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPQSSPSSS RDHVCLVCQD FASGYHYGVP SCVGCKTFFR RTIMKKQKYI CQFEGNCPVD  60
   61 KTIRCACRYC RFEKCLSVGM DRNALQQNRD PI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2a66A
Description: Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [93-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYTKRTRRPK KELKTTSDCS SDEGASTPPS VSPLQLSPPP ISPLLFQAAP LKPRRCILQT  60
   61 LAEREKCAND LRLSEYLPIR SLHEALCSKA LLNDTAFLEK WGQPSERHQI FDLRFVNHDD 120
  121 YHYWHERDWF LLTEYAKTFD VFEALDYQDK AELVRHAAIT VPVLVQVWNS PDYGPDTIVF 180
  181 PDGAYFDRTP EPTRRTQQEK VSNVGSRAQA VP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.154902
Match: 1z5xE
Description: hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle