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View Structure Prediction Details

Protein: apm-3
Organism: Caenorhabditis elegans
Length: 414 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apm-3.

Description E-value Query
Range
Subject
Range
gi|56119012, gi|... - gi|56119012|ref|NP_001007887.1| adaptor-related protein complex 1, mu 1 subunit [Gallus gallus], gi|...
gi|542177093|ref... - PREDICTED: AP-1 complex subunit mu-1 isoform X2 [Zonotrichia albicollis]
401.0 [0..3] [414..4]

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Predicted Domain #1
Region A:
Residues: [1-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSLFFVNS SGDVLLEKHW KSVIHRSICD YFFDIQKKSI HPEDVPPIIS TPHHYLINVY  60
   61 QNNLFLVAVI TVETPPLMVI EFLHRVIQTF TQYFDEFSDS SMKENCVMVF ELLDEMLDNG 120
  121 FPLVTEMNIL QDLIKPPNFL RNIANQVTGR TNLSETLPTG QLSNIPWRRQ GVKYTNNEAY 180
  181 FDVIEEIDVI VDKQGSTVFA EIQGYVDVCC KLSGMPDLTM TLINPRLLDD VSFHPCVRYK 240
  241 RWENEKVLSF VPPDGNFRLL SYHIAAQNMV AIPIYVRQVI SLKPNAGKLD LTVGPKLSMG 300
  301 KVLEDVVLEI TMPKCVQNCN LVASHGRIAF DPTTKLLQWT IGKIEVGKPS TLKGSVAVSG 360
  361 TTVAENPPIS LKFKINQLVL SGLKVNRLDM YGEKYKPFKG VKYITKAGKF TIRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 110.0
Match: 1w63M
Description: AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle