YRC Public Data Repository - Protein Structure Prediction

Protein:	egl-1
Organism:	Caenorhabditis elegans
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for egl-1.

Description	E-value	Query Range	Subject Range
gi\|11359741, gi\|... - gi\|3133315\|gb\|AAC39023.1\| programmed cell death activator EGL-1 [Caenorhabditis elegans], pir\|\|T4303...	119.0	[0..16]	[106..1]
gi\|187035404, gi... - gi\|39589902\|emb\|CAE60900.1\| Hypothetical protein CBG04615 [Caenorhabditis briggsae], gi\|187035404\|em... gi\|157765138 - gi\|157765138\|ref\|XP_001674912.1\| Hypothetical protein CBG04615 [Caenorhabditis briggsae AF16]	105.0	[0..3]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMLTFASTS SDLLPMSNVF DVQSSVFYNE KNMFYSSSQD FSSCEDSSQF ADDSGFFDDS  60
   61 EISSIGYEIG SKLAAMCDDF DAQMMSYSAH ASDRSLFHRL LDFFAF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.870	d.20.1	UBC-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits