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View Structure Prediction Details

Protein: flh-3
Organism: Caenorhabditis elegans
Length: 420 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for flh-3.

Description E-value Query
Range
Subject
Range
gi|39598354, gi|... - gi|39598354|emb|CAE69047.1| Hypothetical protein CBG15055 [Caenorhabditis briggsae], gi|187027466|em...
gi|157755197 - gi|157755197|ref|XP_001669942.1| Hypothetical protein CBG15055 [Caenorhabditis briggsae AF16]
548.0 [0..16] [418..21]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLASQISQA KTGNATMEWA KNYVSKLNDG QLALLQKMYA DHQAKLKASE DEKKKKEMEE  60
   61 LKMKAQQQAI LDSLTQQIPI MVDVLRSSTS PDSQP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSSSVMSST DEDQITVKDV LIGKINKAQR QSSPNSSKPY TPRGIRERVL FDEHLYVFDK  60
   61 CSYDSKKRFF RCERKNTCPA RIHTPFDAER VIHKVQVHNH PPPTTFDLAH YNIDYGKVKS 120
  121 GHILSLN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.744727
Match: PF04500.7
Description: No description for PF04500.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [223-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPQQTKNLLP PSLLTPKSDL EDETLSTKTE QKNASTMNIL LSMTNNCDGR KPITLRLPDL  60
   61 FNKISEMEIH DMEMTLTKFL LENRELRTDL ISRNGDLPVF FPNAHNDELV LFVADQHEND 120
  121 SVFQMIRVSE RNEKSIRQAI QEHLQKVSNR SLMMNISSKI NVPLSQQMID QWRTEEFIRL 180
  181 DSSKPNFWKI HHVSKLQD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle