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View Structure Prediction Details

Protein: CE35521
Organism: Caenorhabditis elegans
Length: 161 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35521.

Description E-value Query
Range
Subject
Range
gi|157750154 - gi|157750154|ref|XP_001678790.1| Hypothetical protein CBG04267 [Caenorhabditis briggsae AF16]
gi|39583084, gi|... - gi|39583084|emb|CAE60624.1| Hypothetical protein CBG04267 [Caenorhabditis briggsae], gi|187035871|em...
134.0 [0..1] [153..4]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQIFQFLII LAFITSSAYA IKCHQCGGAE KIPKFAKNAL AKLNISVDSL YGDCKKTSGS  60
   61 DMCSNGTFCL KRAKVYQIGY SGVNLKWTTY TKGCATLRED NDQIPTNTCY ELGQVSNSSG 120
  121 YTAKRMDCYC QKDFCNSTTN LGGSLIMTIL FVLSIFVQYS I

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.33
Match: 1ywhA
Description: crystal structure of urokinase plasminogen activator receptor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle